View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18301_low_9 (Length: 526)
Name: NF18301_low_9
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 48398489 - 48397973
Alignment:
| Q |
1 |
ctttaattctctccaaaaatccatttggtaaaaaatcaaaaggatcagaatgtgtttcagcactgaagtaagaagcattagcaactttatcatttggact |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48398489 |
ctttagttctctccaaaaatccatttggtaaaaaatcaaatggatcagaatctgtttcagcactgaagtaagaagcattagcaactttatcatttggact |
48398390 |
T |
|
| Q |
101 |
tctaacaacccataaaaaccgttgctcactcatttccaagccaagtgccaattcaactatctgtttactagagagggtcccaccacttccaaaagaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48398389 |
tctaacaacccataaaaaccgttgctcactcatttccaagccaagtgccaattcaactatctgtttactagagagggtcccaccacttccaaaagaaaca |
48398290 |
T |
|
| Q |
201 |
aacagaacactcccgtgtgcttgattatctaaccatttcaaactctctgagttcggtccaatttgacctacttctacttctctctgtactaatggtccaa |
300 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48398289 |
aacagaacactcccatgtggttgattatctaaccatttcaaactctctgagttcggtccaatttgacctacttctacttctctctttactaatggtccaa |
48398190 |
T |
|
| Q |
301 |
ccgggtaaaacttaggttttccaggttcttcctttagtaactccttgattggacccggttcaagttcaagaaaactgttctctataagtccatctgcttc |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48398189 |
ccgggtaaaacttaggttttcctggttcttcctttagtaactccttgattggacccggttcaagttcaagaaaactattctctataagtccatctgcttc |
48398090 |
T |
|
| Q |
401 |
tctgtatctcttcgcgttgcgaaagacactttggtaagcatcgttcttcctgtcttgaagcgggtctagtaaatatttaccgtgaataggaatacagccg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48398089 |
tctgtatctcttcgcgttgcgaaagacactttggtaagcatcgttcttcctgtcttgaagagggtctagtaaatatttaccgtgaataggaatacaaccg |
48397990 |
T |
|
| Q |
501 |
ggaattttcacaggttc |
517 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48397989 |
ggaattttcacaggttc |
48397973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University