View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_high_1 (Length: 863)
Name: NF18302_high_1
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 4366829 - 4367265
Alignment:
| Q |
19 |
gtcagaaccctaattccgacgctgaaattccttccatcaccattttactctttatcaatttctcacattttgctccttcactttcgtgtatcaaccaatt |
118 |
Q |
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| T |
4366829 |
gtcagaaccctaattccgacgctaaaattccttccatcaccattttactcttcatcaatttctcacattttgctccttcactttcgtgtatcaaccaatt |
4366928 |
T |
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| Q |
119 |
tcagaattcgtcaaaagagtaccattcacttcaattgaggcgtaaatagttttgatcggagaaaaacgcgattttcaattttcctgttaaaattttcgat |
218 |
Q |
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| T |
4366929 |
tcagaattcgtcaaaagagtaccattcacttcttttgaggcgtaaatagttttgatcggagaaaaacgcgattttcaattttcctgttaaaattttcgat |
4367028 |
T |
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| Q |
219 |
tttccggaggatgagatttgaacgatgaacaatgccggtaatgcgtagtggagcgcgccggggacggccaacgaagcggcaatctcagaagaagcaggaa |
318 |
Q |
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| T |
4367029 |
tttccggaggatgagatttgaacgatgaacaatgccggtaatgcgtagtggagcgcgccggggacggccaacgaagcggcaatctcagaagaagcaggaa |
4367128 |
T |
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| Q |
319 |
gaggagaagaaaactccagttgaagtggaggcggttgcgacgagaacgagacggcggcgtgcagctgcagcggcggcggttgaagagga---------ta |
409 |
Q |
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| T |
4367129 |
gaggagaagaaaactccagttgaagtggaggcggttgcgacgagaacgagacggcggcgtgcagctgcagcggcggcggttaaagaggagccggctgtta |
4367228 |
T |
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| Q |
410 |
aggtaaatgatgacgtagttgctgttgttgccgtggc |
446 |
Q |
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| T |
4367229 |
aggtaaatgatgacgtagttgctgttgttgccgtggc |
4367265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 523 - 846
Target Start/End: Original strand, 4367339 - 4367662
Alignment:
| Q |
523 |
tttaatcgtggtggtcatagcattgataaggctaatgctggtgaagaagatagcaatggctttgttattcctgaaaaggttcattttttgattccatgct |
622 |
Q |
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| T |
4367339 |
tttaatcgtggtggtcatagcattgataaggctaatgctggtgaagaagatagcaatggctttgttattcctgaaaaggttcattttttgattccatgca |
4367438 |
T |
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| Q |
623 |
agtgtttatcttttagttttaagtgcatgtgtaaattgtgttnnnnnnngtgcatgtgtaaattgttgtttgaattggtgttatggtttaagctttttca |
722 |
Q |
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| T |
4367439 |
agtgtttatcttttagttttaagtgcatgtgtaaattgtgttaaaaaaagtgcatgtgtaaattgttgtttgaattggtgttatggtttaagctttttca |
4367538 |
T |
|
| Q |
723 |
tgttttggtagcttgatggggggaaattgcacgcagttcatttttgttggtaatgtgggtttatttctatgattgtgatttgtttgttacttgtgaactt |
822 |
Q |
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| T |
4367539 |
tgttttggtggcttgatggggggaaattgcacgcagttcatttttgttggtaatgtgggtttatttctatgattgtgatttgtttgttacttgtgaactt |
4367638 |
T |
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| Q |
823 |
ttttactgtgaatgtgagtgtgat |
846 |
Q |
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| T |
4367639 |
ttttactgtgaatgtgagtgtgat |
4367662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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