View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_high_17 (Length: 405)
Name: NF18302_high_17
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 17218323 - 17218207
Alignment:
| Q |
11 |
gaagaagaggaacacctaaacgttgtgtttggtggtaagggtattgttgtaattcaggtagtgagaatgataaaggggtattatgggtattattattatt |
110 |
Q |
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| T |
17218323 |
gaagaagaggaacacctaaacgttgtgtttggtggtaagggtattgttgtaattcaggtagtgagaacgataaaggggtattatgggtattattattatt |
17218224 |
T |
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| Q |
111 |
agcatgaaactgaaaat |
127 |
Q |
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| T |
17218223 |
agcatgaaactgaaaat |
17218207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 17218057 - 17217948
Alignment:
| Q |
280 |
aattcagctaaagtacgttttccgatgaagcgattttgttggatctgtgaagaaggatctagaaaaattggaggaagtggttgttgttgggtacggtaaa |
379 |
Q |
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| T |
17218057 |
aattcagctaaagtacgttttccgatgaagcgattttgttggatctgtgaagaaggatctagaaaaattggaggaagtggttgttgttgggtacggtaaa |
17217958 |
T |
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| Q |
380 |
gagaaggaag |
389 |
Q |
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| T |
17217957 |
gagaaggaag |
17217948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 17218180 - 17218138
Alignment:
| Q |
157 |
cttggtttaacagaacgaagtaaaagattggacagaacatgac |
199 |
Q |
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| T |
17218180 |
cttggtttaacagaacgaagtaaaagattggacagaacatgac |
17218138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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