View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_high_22 (Length: 345)
Name: NF18302_high_22
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 44967509 - 44967824
Alignment:
| Q |
10 |
tatcattatattggatcattgtatcgaaagtttgtttgacaatctagtttggagacaacatgttcttctattaacgttaacaacattgcaaatataggat |
109 |
Q |
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| T |
44967509 |
tatcatgatattggatcattgtatcgaaagtttgtttgacaatctagtttggagaca---tgttcttctattaacgttagcgacattgcaaatataggat |
44967605 |
T |
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| Q |
110 |
gtgagagattcgtacatgatggagaaattgttgaattcaagtgtaacacatcaattatgaatgaggaaaatttaggatagaggtatgacatctcactctc |
209 |
Q |
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| T |
44967606 |
gtgagagattcatacataatggagaaattgttgaatgca---------catcaattatgaatgaggaaaatttaggatagaggtatgacatctcactctc |
44967696 |
T |
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| Q |
210 |
ttatgcttttaaaacctttatttgttgttattttccacttccccaaatttcccattaaatgattttagaactttggttcgacttggtagaagagcattat |
309 |
Q |
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|||||||||||||||||||||| ||||||||||| ||| | |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44967697 |
ttatgcttttaaaacctttattcgttgttatttttgactatctcaaacttcccaataaatgattttagaattttggttcgacttggtagaagagcattat |
44967796 |
T |
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| Q |
310 |
caaaaccgattaaaccaatttaactatg |
337 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
44967797 |
caaaaccgattaaaccaatttaactatg |
44967824 |
T |
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