View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18302_high_35 (Length: 237)

Name: NF18302_high_35
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18302_high_35
NF18302_high_35
[»] chr2 (2 HSPs)
chr2 (1-221)||(2037596-2037818)
chr2 (1-209)||(29464001-29464207)
[»] chr6 (3 HSPs)
chr6 (1-221)||(34519007-34519224)
chr6 (142-221)||(21508091-21508165)
chr6 (2-105)||(21508211-21508316)
[»] chr8 (4 HSPs)
chr8 (1-171)||(6816543-6816716)
chr8 (12-106)||(44667407-44667503)
chr8 (169-221)||(6816330-6816382)
chr8 (138-210)||(44667304-44667376)
[»] chr7 (2 HSPs)
chr7 (8-221)||(28386706-28386919)
chr7 (8-221)||(28382238-28382451)
[»] chr4 (1 HSPs)
chr4 (1-221)||(28657724-28657942)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2037818 - 2037596
Alignment:
Q  1 cctactctaatataataaactacatattcataaagtttgctaaaagaagataa--ttaaataagacatcaactaaataattaggaaccatgatttgatca 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  2037818 cctactctaatataataaactacatattcataaagtttgctaaaagaagataaaattaaataagacatcaactaaataattaggaaccatgatttgatca 2037719  T
Q  99 tataataataaataaataaatttgaaactannnnnnnnnaagagagaaataatatcatcactcaataaatcatacccataaactatttttacatcaaatt 198  Q
    |||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  2037718 tataatgataaataaataaatttgaaactattttttcttaagagagaaataatatcatcactcaataaatcatactgataaactatttttacatcaaatt 2037619  T
Q  199 atgataaaatactttaacataaa 221  Q
    |||||||||||||||||||||||    
T  2037618 atgataaaatactttaacataaa 2037596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 29464207 - 29464001
Alignment:
Q  1 cctactctaatataataaactacatattcataaagtttgctaaaagaagataa--ttaaataagacatcaactaaataattaggaaccatgatttgatca 98  Q
    ||||| ||||||||||||| || ||||||||| |||||||||||| || ||||  | |||||||||||||||||||||||||||||  | ||||||| ||    
T  29464207 cctaccctaatataataaagtaaatattcatatagtttgctaaaataatataacataaaataagacatcaactaaataattaggaatgaggatttgacca 29464108  T
Q  99 tataataataaataaataaatttgaaactannnnnnnnnaagagagaaataatatcatcactcaataaatcatacccataaactatttttacatcaaatt 198  Q
    ||||||     | ||| ||| |||||| ||         ||||||||||||||||||||||| ||||||||||| | ||||  ||||||||| || |||     
T  29464107 tataat----gaaaaaaaaaattgaaaatattttttcttaagagagaaataatatcatcacttaataaatcatatcgataatatatttttacgtcgaatc 29464012  T
Q  199 atgataaaata 209  Q
    || ||||||||    
T  29464011 atcataaaata 29464001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34519007 - 34519224
Alignment:
Q  1 cctactctaatataataaactacatattcataaagtttgctaaaagaagat--aattaaataagacatcaactaaataattaggaaccatgatttgatca 98  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| |||||  ||| |||||||||||||||||||||||||||||| | ||||||| ||    
T  34519007 cctaatctaatataataaactatatattcataaagtttgctaaaataagataaaataaaataagacatcaactaaataattaggaacaaagatttgacca 34519106  T
Q  99 tataataataaataaataaatttgaaactannnnnnnnnaagagagaaataatatcatcactcaataaatcatacccataaactatttttacatcaaatt 198  Q
    |   |||||||||||| |||||||||| ||         | ||||||||||||||||||||||||||||||||| | ||||| ||||||||| |||||||    
T  34519107 t---ataataaataaa-aaatttgaaaatattgtttcctatgagagaaataatatcatcactcaataaatcata-cgataaaatatttttacgtcaaatt 34519201  T
Q  199 atgataaaatactttaacataaa 221  Q
    |||||||||||||| | ||||||    
T  34519202 atgataaaatacttaagcataaa 34519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 21508165 - 21508091
Alignment:
Q  142 gagaaataatatcatcactcaataaatcatacccataaactatttttacatcaaattatgataaaatactttaacataaa 221  Q
    ||||||||||||||||||||||||||||||||  |     ||||||||| |||||||||||| |||||||| ||||||||    
T  21508165 gagaaataatatcatcactcaataaatcatactga-----tatttttacgtcaaattatgatcaaatacttgaacataaa 21508091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 21508316 - 21508211
Alignment:
Q  2 ctactctaatataataaactacatattcataaagtttgctaaaagaagat--aattaaataagacatcaactaaataattaggaaccatgatttgatcat 99  Q
    |||||||||||||| |||  | ||||||||| |||||||||||| |||||  ||| | ||||||||| ||| |||||||||||||  | ||||| | |||    
T  21508316 ctactctaatataacaaaggaaatattcatatagtttgctaaaataagataaaataacataagacatgaacaaaataattaggaatgaggatttaaccat 21508217  T
Q  100 ataata 105  Q
    ||||||    
T  21508216 ataata 21508211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 6816716 - 6816543
Alignment:
Q  1 cctactctaatataataaactacatattcataaagtttgctaaaagaagataa--ttaaataagacatcaactaaataattaggaaccatgatttgatca 98  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||||  | ||||||||||||||||| |||||||||||| | ||||||| ||    
T  6816716 cctactctaatataataaactatatattcataaagtttgctaagataagataaaataaaataagacatcaactagataattaggaacaaagatttgacca 6816617  T
Q  99 tataataataaataaataaatttgaaact-annnnnnnnnaagagagaaataatatcatcactcaataaatcat 171  Q
    |||||| ||||||||||||||| |||||| |         ||||||||||||||||||||||||||||||||||    
T  6816616 tataatgataaataaataaattcgaaactaattttttctcaagagagaaataatatcatcactcaataaatcat 6816543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 44667503 - 44667407
Alignment:
Q  12 ataataaactacatattcataaagtttgctaaaagaagataa--ttaaataagacatcaactaaataattaggaaccatgatttgatcatataataa 106  Q
    |||||||| || ||||||||  ||||| |||||| || ||||  | |||||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  44667503 ataataaagtaaatattcatgtagtttactaaaataatataaaataaaataagacatcaactaaataattaggaacgatgacttgaccatataataa 44667407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 6816382 - 6816330
Alignment:
Q  169 catacccataaactatttttacatcaaattatgataaaatactttaacataaa 221  Q
    |||||| ||||| |||| ||||||||||||||||||||||| |||| ||||||    
T  6816382 cataccgataaaatattgttacatcaaattatgataaaataatttagcataaa 6816330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 44667376 - 44667304
Alignment:
Q  138 aagagagaaataatatcatcactcaataaatcatacccataaactatttttacatcaaattatgataaaatac 210  Q
    |||||||||||||||||||| || ||||||||||| | ||||  ||||||||| || ||| || |||||||||    
T  44667376 aagagagaaataatatcatcgcttaataaatcatatcgataatatatttttacgtcgaataatcataaaatac 44667304  T

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Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 28386919 - 28386706
Alignment:
Q  8 taatataataaactacatattcataaagtttgctaaaagaagataat-taaataagacatcaactaaataattaggaaccatgatttgatcatataataa 106  Q
    ||||||||||||||| ||||||||| | ||| | |||| |||||||  |||||||||||||| |||||||||||||||| |||||||||||| ||| |||    
T  28386919 taatataataaactaaatattcatataattttccaaaataagataaaataaataagacatcatctaaataattaggaacgatgatttgatcacatagtaa 28386820  T
Q  107 taaataaataaatttgaaactannnnnnnnn-aagagagaaataatatcatcactcaataaatcatacccataaactatttttacatcaaattatgataa 205  Q
      ||  ||| ||||||||| ||          ||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||    
T  28386819 ataa--aatcaatttgaaaatatttttttattaagagagaaataatatcatcactcaataaatcataccgataaaatatttttgcgtcaaattatgataa 28386722  T
Q  206 aatactttaacataaa 221  Q
    ||||||||| ||||||    
T  28386721 aatactttagcataaa 28386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 28382451 - 28382238
Alignment:
Q  8 taatataataaactacatattcataaagtttgctaaaagaagataat-taaataagacatcaactaaataattaggaaccatgatttgatcatataataa 106  Q
    ||||||||||||||| ||||||||| | |||   |||| |||||||  ||||| ||| |||| |||||||||||||||| |||||||||||| ||| |||    
T  28382451 taatataataaactaaatattcatataatttttcaaaataagataaaataaatcagaaatcagctaaataattaggaacgatgatttgatcacatagtaa 28382352  T
Q  107 taaataaataaatttgaaactannnnnnnnn-aagagagaaataatatcatcactcaataaatcatacccataaactatttttacatcaaattatgataa 205  Q
      ||  ||| ||||||||| ||          || |||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||    
T  28382351 ataa--aatcaatttgaaaatatttttttattaaaagagaaataatatcatcactcaataaatcataccgataaaatatttttgcgtcaaattatgataa 28382254  T
Q  206 aatactttaacataaa 221  Q
    ||||||||| ||||||    
T  28382253 aatactttagcataaa 28382238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28657724 - 28657942
Alignment:
Q  1 cctactctaatataataaactacatattcataaagtttgctaaaagaagataa--ttaaataagacatcaactaaataattaggaaccatgatttgatca 98  Q
    ||||||||||||||||||| || |||| |||| |||||||||||| |||||||  | |||||||| ||||||||||||||||||||| | ||||||| ||    
T  28657724 cctactctaatataataaagtaaatatccatatagtttgctaaaataagataaaataaaataagaaatcaactaaataattaggaacaaagatttgacca 28657823  T
Q  99 tataataataaataaataaatttgaaactannnnnnnnnaagagagaaataatatcatcactcaataaatcatacccataaactatttttacatcaaatt 198  Q
    |   ||||||||||||||||   |||| ||         || |||||||||||||||||||||||||||||||| | ||||| |||||||||  |||||     
T  28657824 t---ataataaataaataaaaccgaaaatattgtttcttaaaagagaaataatatcatcactcaataaatcata-cgataaaatatttttacgccaaatg 28657919  T
Q  199 atgataaaatactttaacataaa 221  Q
    ||| |||||||||| | ||||||    
T  28657920 atgctaaaatacttaagcataaa 28657942  T

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