View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18302_high_37 (Length: 225)
Name: NF18302_high_37
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_high_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10482881 - 10482676
Alignment:
| Q |
1 |
gctaggtgaaacaaatgcttatgtgacagtatattttttcatgtttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10482881 |
gctaggtgaaacaaatgcttatgtgacagtatattttttcatgtttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaa |
10482782 |
T |
|
| Q |
101 |
ttgatatttctgagttgctctcaagagattctgagcaagtaagtagtttctttatatgacaatactccgatttgtgtttgaaaaaagcaatactctagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10482781 |
ttgatatttctgagttgctctcaagagattctgagcaagtaagtagtttctttatatgacaatactccgatttgtgtttgaaaaaagcaatactctagtt |
10482682 |
T |
|
| Q |
201 |
ctatat |
206 |
Q |
| |
|
|||||| |
|
|
| T |
10482681 |
ctatat |
10482676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10538627 - 10538465
Alignment:
| Q |
1 |
gctaggtgaaacaaatgcttatgtgacagtatattttt----tcatg-tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttc |
95 |
Q |
| |
|
|||||||| |||||||| | |||||||||| ||||||| |||| |||||| ||||||| ||||||| || ||||||||| |||||||| ||||||| |
|
|
| T |
10538627 |
gctaggtgcaacaaatgttaatgtgacagtctatttttgtgctcattatttaattaggtgattcttttactgaggggttagtaggatatacaaaggcttc |
10538528 |
T |
|
| Q |
96 |
ttcaattgatatttctgagttgctctcaagagattctgagcaagtaagtagtttctttatatgaca |
161 |
Q |
| |
|
| |||||| ||||||||||| |||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
10538527 |
t---attgatgtttctgagttggtctcaacagactctgtgcaagtaagtagtttctttatatgaca |
10538465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10457355 - 10457194
Alignment:
| Q |
1 |
gctaggtgaaacaaatgcttatgtgacagtatattttttcatgtt-------taatcaggtgatacttttaccgatgggttagtaagatatacagaggct |
93 |
Q |
| |
|
||||||| ||||||||| | |||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
10457355 |
gctaggtaaaacaaatgttaatgtgacaatatgttttttcatgttcattatttaatcaggtgatacttttactgatgggttagtaagatatacaaaggct |
10457256 |
T |
|
| Q |
94 |
tcttcaattgatatttctgagttgctctcaagagattct---gagcaagtaagtagtttctttatat |
157 |
Q |
| |
|
||| |||||| ||||| ||||| |||| |||||||| | ||||||||||||||||| ||||| |
|
|
| T |
10457255 |
tct---attgatgtttcttagttggtctc--gagattctggagtgcaagtaagtagtttctctatat |
10457194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 10467379 - 10467261
Alignment:
| Q |
44 |
tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattct---gagcaagt |
140 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| || ||||| ||||| |||||||| || |||||||||||||| | |||||| |
|
|
| T |
10467379 |
tttaattaggtgatacttttaccgatgggttggtaagatatacaaag---tcttctgttgatgtttctgagctgatctcaagagattctggagtgcaagt |
10467283 |
T |
|
| Q |
141 |
aagtagtttctttatatgacaa |
162 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
10467282 |
tagtattttctttatatgacaa |
10467261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10501028 - 10500864
Alignment:
| Q |
1 |
gctaggtgaaacaaatgcttatgtgacagtatattttttcatgtt----taatcaggtgatacttttaccgatgggttagtaagatatacagaggcttct |
96 |
Q |
| |
|
|||||||||||||||| ||||||||| || | ||||||| | || |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
10501028 |
gctaggtgaaacaaatctttatgtgacggtctgttttttcgtcttcaattaatcaggtgatacttttactgatggcttagtaagatatacaaaggcttct |
10500929 |
T |
|
| Q |
97 |
tcaattgatatttctgagttgctctcaagagattct---gagcaagtaagtagtttctttatatgaca |
161 |
Q |
| |
|
| |||| | ||||||||| | || ||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
10500928 |
---actgatgtatctgagttggtttctggagtttctggagtgcaagtaagtagtttctttatatgaca |
10500864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 7466896 - 7466976
Alignment:
| Q |
44 |
tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagag |
127 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||| |||||||| | |||| ||||||||||| ||||||||| |
|
|
| T |
7466896 |
tttaatcaggtgatactattaccgatgggttggtaagatatacaaaggcttct---actgatgtttctgagttggtctcaagag |
7466976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 10512340 - 10512222
Alignment:
| Q |
44 |
tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattct---gagcaagt |
140 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||||| | |||||||| ||||| ||||||||||| | ||||||| |||| | |||||| |
|
|
| T |
10512340 |
tttaatcaggcgatacttttactgatggattagtaagatatagaaaggcttct---gttgatgtttctgagttggtttcaagagtttctggagtgcaagt |
10512244 |
T |
|
| Q |
141 |
aagtagtttctttatatgacaa |
162 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
10512243 |
aagtagtttctaaatatgacaa |
10512222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 10444512 - 10444392
Alignment:
| Q |
42 |
tgtttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattct---gagcaa |
138 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| | ||||||| |||| || |||||| ||||||||| | ||| |||||||| | |||| |
|
|
| T |
10444512 |
tgtttaatcaggtgatacttttaccaatgggatagtgacatatacaaaggcacct---attgatgtttctgagtaggtctttggagattcttaagtgcaa |
10444416 |
T |
|
| Q |
139 |
gtaagtagtttctttatatgacaa |
162 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10444415 |
gtaagtagtttctttatatgacaa |
10444392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 10845374 - 10845331
Alignment:
| Q |
44 |
tttaatcaggtgatacttttaccgatgggttagtaagatataca |
87 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
10845374 |
tttaatcaggagatacttttactgatgggttagtaagatataca |
10845331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 28108174 - 28108264
Alignment:
| Q |
61 |
tttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattctga---gcaagtaagtagtttct |
151 |
Q |
| |
|
||||| |||||||||||||| |||||| | ||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
28108174 |
tttactgatgggttagtaagttatacaatgacttct---attgatgtttctaagttggtctcaagagattctgatgtgcaagtaagtagtttct |
28108264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 27963638 - 27963579
Alignment:
| Q |
95 |
cttcaattgatatttctgagttgctctcaagagattctga---gcaagtaagtagtttct |
151 |
Q |
| |
|
|||| |||||| ||||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
27963638 |
cttccattgatgtttctgagtcggtctcaagagattctgacgtgcaagtaagtagtttct |
27963579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 24051085 - 24051203
Alignment:
| Q |
44 |
tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattct---gagcaagt |
140 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| || | | ||| ||||||||| |||||| ||||||||||| |||||||||||||| | |||||| |
|
|
| T |
24051085 |
tttaatcaggcgatacttttactgatgggtcggtgataagtaccgaggcttct---attgatgtttctgagttggtctcaagagattctggagtgcaagt |
24051181 |
T |
|
| Q |
141 |
aagtagtttctttatatgacaa |
162 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
24051182 |
aggtagtttctttatatgacaa |
24051203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University