View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18302_high_4 (Length: 740)

Name: NF18302_high_4
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18302_high_4
NF18302_high_4
[»] chr6 (1 HSPs)
chr6 (18-728)||(4932709-4933419)


Alignment Details
Target: chr6 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 18 - 728
Target Start/End: Complemental strand, 4933419 - 4932709
Alignment:
Q  18 tcagtcaatgagtcctaaccctaaccctaattctggatatgatccaagtagaataccatcttctgtttttgcttctaaacctacaagtcccatggaatgg 117  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4933419 tcagtcaatgagtcctaaccctaaccctaattttgaatatgatccaagtagaataccatcttctgtttttgcttctaaacctacaagtcccatggaatgg 4933320  T
Q  118 agtgttcaatcaaatgaatcattgtttagtcttcatttgggaaactacagtttctcaaaggatcaattttttgcattcagtagtaaatcaggtgaatttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4933319 agtgttcaatcaaatgaatcattgtttagtcttcatttgggaaactacagtttctcaaaggatcaattttttgcattcagtagtaaatcaggtgaatttc 4933220  T
Q  218 caaagaatagtgattttatcggcgcgtcgacgacattgccaccagttcaagaggtgaatcataataatgacaaaaatgaagtggataaggagagacattc 317  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4933219 caaagaatagtgattttatcggcacatcgacgacattgccaccagttcaagaggtgaatcataataatgacaaaaatgaagtgggtaaggagagacattc 4933120  T
Q  318 tatgtcgccggactcgtctcatggctcaatagatgcattagatgaaacgacaaatttgcctttggggaaggacaatattaaaacatcaaaacaaaaaata 417  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4933119 tatgtcgccggactcgtcttatggctcaatagatgcattagatgaaacgacaaatttgcctttggggaaggacaatattaaaacatcaaaagaaaaaata 4933020  T
Q  418 gatttagttttgaaggacgatgaccatgataaaaccaaaacatcgacaaatgtcaatacaaatacattggaaaaaattcatgaagatcgtaataaagcgg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  4933019 gatttagttttgaaggacgatgaccatgataaaaccaaaacatcgacaaatgtcaatacaaatacattggacaaaattcatgaagatcataataaagcgg 4932920  T
Q  518 tggcggttcctagtgaagaacctaagaattatgcgacgaatgtctcgtaccgttcagtcgaaagcgatatgagcaaccattcatttcaatttcctatgtg 617  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4932919 tggtggttcctagtgaagaacctaagaattatgcgaccaatgtctcgtaccgttcagtcgaaagcgatatgagcaaccattcatttcaatttcctatgtg 4932820  T
Q  618 agtctctcatcatatcttcttgcttgtatgtgtatgtcattatgctctataatttatattagaggtgtaattataatcatttcagtttcatatattttca 717  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4932819 agtctctcatcatatcttcttgcttatatgtgtatgtcattatgctctataatttatattagaggtgtaattataatcattttagtttcatatattttca 4932720  T
Q  718 ttttagatttt 728  Q
    |||||||||||    
T  4932719 ttttagatttt 4932709  T

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