View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_high_40 (Length: 212)
Name: NF18302_high_40
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 6297051 - 6297142
Alignment:
| Q |
14 |
agatgaagaggatagaaaaattatttggacagtaaagcagaagttaggtgatatatatattcaaaattttaacacttatatcgcatttttccaa |
107 |
Q |
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| T |
6297051 |
agatgaagaggatagaaaaattatttggacagtaaaccagaagttaggtg--atatatattcaaaattttaacactcatatcgcatttttccaa |
6297142 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 6297247 - 6297298
Alignment:
| Q |
146 |
ttacaatttaaaaagacacaactcgttacccttaatttgtcacaaaagttgt |
197 |
Q |
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| T |
6297247 |
ttacaatttaaaaagaaacaactcgttacccttaatttgtcacaaaagttgt |
6297298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 6297218 - 6297247
Alignment:
| Q |
101 |
tttccaaccaaaacattgttttcgttttat |
130 |
Q |
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| T |
6297218 |
tttccaaccaaaacattgttttcgttttat |
6297247 |
T |
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