View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_1 (Length: 1202)
Name: NF18302_low_1
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 28602342 - 28601880
Alignment:
| Q |
1 |
ttatattcatacagaataatctacaactaccaactacaaaccactatggcccccaaactctctcaattaatccaatgnnnnnnnctactnnnnnnngcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
28602342 |
ttatattcatacagaataatctacaactaccaactacaaaccactatggcccccaaactctctcaattaatccaatgtttttttctactaaaaaaagcat |
28602243 |
T |
|
| Q |
101 |
ctttgattgacaaaataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagatactgaaaatgactttcccatgcattttaatcctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28602242 |
ctttgattgacaaaataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagatactgaaaatgactttcccatgcattttaatcctttg |
28602143 |
T |
|
| Q |
201 |
tttcatgtcaatgatgtaatggaacataactgtta----------gtatcatttgttggaaatgtcggggcttgggtgattagagtgaagtttaaaattt |
290 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28602142 |
tttcatgtcaatgatgtaatggaacataactgttaagataaatgagtatcatttgttggaaatgtcggggcttgggtgattagagtgaagtttaaaattt |
28602043 |
T |
|
| Q |
291 |
aaaatacatcgttcaaaattataatcgtgtgt--tattatcgtgtatgagactgtgattaattcgaataagacagaagagttgtgttatgtcttgggctt |
388 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28602042 |
aaaatacatcgttcaaaattataatcgtgtgtgttattatcgtgtatgagactgtgattaattcgaataagacagaagagttgtgttatgtcttgggctt |
28601943 |
T |
|
| Q |
389 |
tgataattattttattgtctaccgtgaatgttgcggtgacgatgtggctttgtgttggcgtaa |
451 |
Q |
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| T |
28601942 |
tgataattattttattgtctactgtgaatgttgcgatgacgatgtggctttgtgttggtgtaa |
28601880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 838 - 1193
Target Start/End: Complemental strand, 28601510 - 28601155
Alignment:
| Q |
838 |
cctcgatcgttatcaatttaagtttgagaatacttagttggtggagcctgaatttgataactctgttcttcagtgttagtaatcttactatggagacatg |
937 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601510 |
cctcgatcgttatcaatttaagtttgagaatacttagttggtggagcctgaatttgataactctgttcttcagtgttagtaatcttactatggagacatg |
28601411 |
T |
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| Q |
938 |
ataaataagccatggatatcatgaaacggagtaaggaaaacatgaattaattaatgcacttagaagcactcctagttagagattatttattttgaaagca |
1037 |
Q |
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| T |
28601410 |
ataaataagccatggatatcatcaaacggagtaaggaaaacatgaattaattaatgcacttagaagcactcctagttagagattatttattttgaaagca |
28601311 |
T |
|
| Q |
1038 |
aagagccaatacattctggtataaggatgcacacacttaaatacattcagtgttgcaactattaggaaaaaggtgaataatactgcatccttgaaggaca |
1137 |
Q |
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| T |
28601310 |
aacagccaatacattctggtataaggatgcacacacttaaatacattcagtgttgcaactattaggaaaaaggtgaataatactgcatccttgaaggaca |
28601211 |
T |
|
| Q |
1138 |
caaacaacgttgtttgtaactcttctgggatatgtgctccattactctctgctcct |
1193 |
Q |
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| T |
28601210 |
caaacaacgttgtttgtaactcttctgggatatgtgctccattactctctggtcct |
28601155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 675 - 841
Target Start/End: Complemental strand, 28601716 - 28601549
Alignment:
| Q |
675 |
ttgatattcagatgaagg-atacccgtgcacttggttcaaaagtcttggaatgaatctgatagtagaagggaaactagattgagctatgacaaatgataa |
773 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601716 |
ttgatattcagatggagggatacccgtgcacttggttcaaaagtcttggaatgaatctgatagtagaagggaaactagattgagctatgacaaatgataa |
28601617 |
T |
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| Q |
774 |
ttggtgcaacttatttccggatgcgaggttggaatgtctaacgactactacatcagatcattaccctc |
841 |
Q |
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| T |
28601616 |
ttggtgcaacttatttccggatgcgaggttggaatgtctaacgactactacatcagatcattaccctc |
28601549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 556 - 679
Target Start/End: Complemental strand, 28601878 - 28601755
Alignment:
| Q |
556 |
tcatgaaatttgttgagacaacattcaaaaacttctcaattttcttgttatatatagggaatttcaatgatattctctcatttgatgagaagaaaggaag |
655 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601878 |
tcatggaatttgttgagacaacattcaaaaacttctcaattttcttgttatatatagggaatttcaatgatattctctcatttgatgagaagaaaggaag |
28601779 |
T |
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| Q |
656 |
agctgaccgcatcaattagttgat |
679 |
Q |
| |
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| T |
28601778 |
agttgatcgcatcaattagttgat |
28601755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 41094364 - 41094431
Alignment:
| Q |
97 |
gcatctttgattgacaaaataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagat |
164 |
Q |
| |
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||||| |||||||| |||| ||||| ||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
41094364 |
gcatcgttgattgagaaaacaaaaaacatatgaacttgtagttaaagcatcatgtttgtaaacaagat |
41094431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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