View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_10 (Length: 549)
Name: NF18302_low_10
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Original strand, 35364186 - 35364703
Alignment:
| Q |
16 |
gttatccctcattaaatcattcattgatcacaatgtataaccatgcatttaatgatagcaaggacgggaaatctttgttgattggggttaagcaatcgct |
115 |
Q |
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| T |
35364186 |
gttatccctcattaaatcagtcattgatcacaatgtataaccatgcatttaatgatagcaaggacgggaaatctttgttgattggggttaagcaatcgct |
35364285 |
T |
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| Q |
116 |
taacctaataagctttattaataagagataagagaagtgaagagataagatatggtaacacataatagtagacatattgtaacttaattaatccctcaga |
215 |
Q |
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| T |
35364286 |
taacctaataagctttattaataagagataagagaagagaagagataagatatggtaacacatactagtagacatattgtaacttaattaatccctcaga |
35364385 |
T |
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| Q |
216 |
gaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagc |
315 |
Q |
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| T |
35364386 |
gaaatatctagaaaactaatagtacaatgcatgaatcaaaccatgggatccatggccagaacagtgctaagattcatagggtacatatactcattggagc |
35364485 |
T |
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| Q |
316 |
cattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaag |
415 |
Q |
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| T |
35364486 |
cattcaagatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaag |
35364585 |
T |
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| Q |
416 |
aggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgttcaccaataattcgttgtaagttagaaa |
515 |
Q |
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| T |
35364586 |
aggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgttcaccaataattcgttgtaagttagaaa |
35364685 |
T |
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| Q |
516 |
ataattacgaaacccttt |
533 |
Q |
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| T |
35364686 |
ataattatgaaacccttt |
35364703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 206 - 488
Target Start/End: Original strand, 35376140 - 35376422
Alignment:
| Q |
206 |
atccctcagagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatac |
305 |
Q |
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| T |
35376140 |
atccctgagagaaatgtctaaaaaactaatagtgcaatgcatgaatcaaactatgggatccatggcgagaacagtgcttagattcatagggtacatatac |
35376239 |
T |
|
| Q |
306 |
tcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcaca |
405 |
Q |
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| T |
35376240 |
tcattggagccagtcaagatctgttgcactatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcaca |
35376339 |
T |
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| Q |
406 |
agtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgtt |
488 |
Q |
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| T |
35376340 |
agtttgaaaggggtgtgcatagtccaatcccattgtaagggccttgtccacaacaagctatctttgatgtaacaaatcctgtt |
35376422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 248 - 488
Target Start/End: Original strand, 35357627 - 35357867
Alignment:
| Q |
248 |
gaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaa |
347 |
Q |
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|||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||| ||||| ||| | | || ||||||||||||||||||| | |
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| T |
35357627 |
gaatcaaaccatggaatccatggcgagaacagtgctaagattcatagggttcatatacaggttggatccaatgaacatctgttggactatgattctgcta |
35357726 |
T |
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| Q |
348 |
gctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggc |
447 |
Q |
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| T |
35357727 |
gctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttgaaataggtgtacacagtccaatcccgttgaatcgcc |
35357826 |
T |
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| Q |
448 |
catactcacaacaagctttctttgatgtaacaaatcctgtt |
488 |
Q |
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| T |
35357827 |
cttgaccacaacaagcatcctttgctgtaacaaatcctgtt |
35357867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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