View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_11 (Length: 542)
Name: NF18302_low_11
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 68 - 525
Target Start/End: Complemental strand, 31662598 - 31662142
Alignment:
| Q |
68 |
ttagagtttattgttgaaggtttatttcttgtagacattgtatctcttctaaacaaaaccatgtgactcaccaagtataaaagacatcctattccagaat |
167 |
Q |
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| T |
31662598 |
ttagagtttattgttgaaggtttatttcttgtagacattgtatctcttctaaacaaaaccatgtgactcaccaagtataaaagacatcctattccagaat |
31662499 |
T |
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| Q |
168 |
tatcacaatgccaaagatcaatagaacattgaaagacttcaatagagaaaatagcccctgacatagcaccaaccgcagcacctcgaatgaagccactctc |
267 |
Q |
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| T |
31662498 |
tatcacaatgccaaagatcaatagaacattcaaagacttcaatagagaaaatagcccctgacatagcaccaaccgcagcacctcgaatgaagccactctc |
31662399 |
T |
|
| Q |
268 |
tgttttttggcctatcaaagctccagtcatagcccccaacaaagttcccactgccaacaaaacaagccaagtcatcgaaccttaataatcccgaatatgt |
367 |
Q |
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| T |
31662398 |
tgttttttggcctatcaaagctccagtcatagcccccaacaaagttcccactgccaacaaaacaagccaagtcatcgaaccttaataatcccgaatatgt |
31662299 |
T |
|
| Q |
368 |
cgcaaaaactgaatgattttgaaacaagacnnnnnnnnnnnnnncacttgagatttgaaaagtccaacacatgacaaaaatgtgcaattttgcgctttaa |
467 |
Q |
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| T |
31662298 |
cgcaaaaactgaatgattttgaaacaagac-aaaaacaaaaaaacacttgaaatttgaaaagtccaacacatgacaaaaatgtgcaattttgccctttaa |
31662200 |
T |
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| Q |
468 |
agttcattgaataattgatccatttaatnnnnnnntgagttgttttgcttataagaat |
525 |
Q |
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| T |
31662199 |
aattcattgaataattgatccatttaataaaaaaataagttgttttgcttataagaat |
31662142 |
T |
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Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 133 - 321
Target Start/End: Original strand, 9084681 - 9084869
Alignment:
| Q |
133 |
actcaccaagtataaaagacatcctattccagaattatcacaatgccaaagatcaatagaacattgaaagacttcaatagagaaaatagcccctgacata |
232 |
Q |
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||||||||||||||||||||| || |||||||| | |||| ||||||||||| ||| ||| ||| ||| ||||||||||| |||| ||| ||||| ||| |
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| T |
9084681 |
actcaccaagtataaaagacaaccaattccagattcatcagaatgccaaagaacaagagatgattcaaaaacttcaatagaaaaaacagctcctgatata |
9084780 |
T |
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| Q |
233 |
gcaccaaccgcagcacctcgaatgaagccactctctgttttttggcctatcaaagctccagtcatagcccccaacaaagttcccactgc |
321 |
Q |
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| T |
9084781 |
gcaccaacagcggcacctcgaatgaaaccgctttcggtctcttgacctatcaaagctcctgtcaaagcacccaataatgttccaactgc |
9084869 |
T |
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