View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18302_low_12 (Length: 510)
Name: NF18302_low_12
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 46630434 - 46629958
Alignment:
| Q |
1 |
catcaaattctggtcgtagagttacacgttcacattctccatttagaacatcacaatacacatgggttgaagaacaacaacagcataaacaatcacagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630434 |
catcaaattctggtcgtagagttacacgttcacattctccatatagaacatcacaatacacatgggttgaagaacaacaacagcataaacaatcacagat |
46630335 |
T |
|
| Q |
101 |
taataaagaggattctgttgaatctgttcaaaccgtttcttcgtccaagagttcaagaatatggagattgagagattttttgttgtttcgtagtgcatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630334 |
taataaagaggattctgttgaatctgttcaaaccgtttcttcgtccaagagttcaagaatatggagattgagagattttttgttgtttcgtagtgcatca |
46630235 |
T |
|
| Q |
201 |
gaaggaagaggaacaagcaaagatccattcagaaaattccctgtttcatacaacaagaaattatctgaagaaggaaaaggttcatcatcaccgtttagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630234 |
gaaggaagaggaacaagcaaagatccattcagaaaattccctgtttcatacaacaagaaattatctgaagaaggaaaaggttcatcatcaccgtttagat |
46630135 |
T |
|
| Q |
301 |
cttctgagattccaaggcctagaagaaaggattctggtgtttctgcacatgaattgcattatgctaggaaaaaagcagagtctgaagatttgaagaagag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630134 |
cttctgagattccaaggcctagaagaaaggattctggtgtttctgcacatgaattgcattatgctaggaaaaaagcagagtctgaagatttgaagaagag |
46630035 |
T |
|
| Q |
401 |
aactttcttgccttataaacaagggattttgggtaggttagctgggttaggatcaaatacaagatgaatgtcatgca |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630034 |
aactttcttgccttataaacaagggattttgggtaggttagctgggttaggatcaaatacaagatgaatgtcatgca |
46629958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 6247022 - 6247122
Alignment:
| Q |
339 |
gtttctgcacatgaattgcattatgctaggaaaaaagcagagtctgaagatttgaagaagagaactttcttgccttataaacaagggattttgggtaggt |
438 |
Q |
| |
|
||||| || |||||| |||||||||||| ||| ||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6247022 |
gtttcagctcatgaaatgcattatgctatgaagaaagctgagtcacaagatatgaagaagagaactttcttgccttatagacaagggattttgggaaggt |
6247121 |
T |
|
| Q |
439 |
t |
439 |
Q |
| |
|
| |
|
|
| T |
6247122 |
t |
6247122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 6246841 - 6246909
Alignment:
| Q |
161 |
atggagattgagagattttttgttgtttcgtagtgcatcagaaggaagaggaacaagcaaagatccatt |
229 |
Q |
| |
|
||||| |||||| ||||| ||||||||| | ||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
6246841 |
atggaaattgagtgatttattgttgtttagaagtgcttcagaaggaagaggttcaagcaaggatccatt |
6246909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University