View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18302_low_13 (Length: 500)

Name: NF18302_low_13
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18302_low_13
NF18302_low_13
[»] chr8 (7 HSPs)
chr8 (37-304)||(40419551-40419818)
chr8 (37-290)||(40421771-40422024)
chr8 (304-492)||(531538-531726)
chr8 (305-491)||(30945486-30945675)
chr8 (305-492)||(3879501-3879689)
chr8 (305-394)||(13802812-13802901)
chr8 (222-290)||(40422082-40422150)
[»] chr1 (6 HSPs)
chr1 (302-492)||(12981373-12981563)
chr1 (305-492)||(45348302-45348489)
chr1 (306-393)||(39241555-39241643)
chr1 (320-377)||(45325765-45325822)
chr1 (304-393)||(27286159-27286248)
chr1 (305-374)||(52385966-52386035)
[»] chr7 (6 HSPs)
chr7 (305-491)||(29243235-29243421)
chr7 (303-492)||(45972276-45972465)
chr7 (304-486)||(47327796-47327978)
chr7 (305-439)||(34093973-34094106)
chr7 (305-377)||(6442492-6442564)
chr7 (308-393)||(29258386-29258471)
[»] chr4 (10 HSPs)
chr4 (305-492)||(20133265-20133452)
chr4 (305-492)||(55919421-55919608)
chr4 (305-482)||(15531255-15531433)
chr4 (305-439)||(42069123-42069256)
chr4 (305-395)||(47031579-47031669)
chr4 (305-393)||(24228277-24228365)
chr4 (303-377)||(45989748-45989822)
chr4 (430-492)||(28679488-28679550)
chr4 (305-391)||(27292942-27293028)
chr4 (305-354)||(4919011-4919060)
[»] chr3 (10 HSPs)
chr3 (305-492)||(39833265-39833452)
chr3 (302-486)||(5232798-5232982)
chr3 (303-486)||(20104175-20104358)
chr3 (305-482)||(53282148-53282326)
chr3 (305-492)||(36950192-36950380)
chr3 (305-482)||(29703580-29703758)
chr3 (300-390)||(33216791-33216881)
chr3 (305-394)||(29833271-29833360)
chr3 (305-393)||(12938397-12938485)
chr3 (304-393)||(50650525-50650614)
[»] scaffold0166 (1 HSPs)
scaffold0166 (304-492)||(30741-30929)
[»] chr5 (7 HSPs)
chr5 (304-492)||(24788358-24788546)
chr5 (320-482)||(39884565-39884728)
chr5 (298-393)||(1828401-1828496)
chr5 (304-393)||(40313872-40313961)
chr5 (304-393)||(41413576-41413665)
chr5 (305-394)||(31482201-31482290)
chr5 (305-393)||(30624860-30624948)
[»] chr2 (10 HSPs)
chr2 (305-492)||(17690459-17690646)
chr2 (305-492)||(15330589-15330777)
chr2 (305-492)||(14810149-14810335)
chr2 (310-492)||(16429724-16429906)
chr2 (305-492)||(37261731-37261910)
chr2 (305-486)||(37078802-37078983)
chr2 (305-492)||(7089079-7089267)
chr2 (310-483)||(33755113-33755287)
chr2 (305-391)||(18977221-18977307)
chr2 (303-393)||(14096250-14096340)
[»] chr6 (2 HSPs)
chr6 (333-389)||(33694805-33694861)
chr6 (450-483)||(28138083-28138116)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 37 - 304
Target Start/End: Original strand, 40419551 - 40419818
Alignment:
Q  37 atattaaagataatttatattatcatatcagcggtaataaattggttactaccaaacttgaattctaacaatttggttctcatcccaaaaactttaaata 136  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  40419551 atattaaagataatttatattatcatatcagcggtaataaatttgttactaccaaacttgaattctaacaaattggttctcatcccaaaaactttaaatg 40419650  T
Q  137 gtgatacaattagccaactcagacctattgcaatggttaacttcaaattcaagattatttctaagattcttgcttatattatctcaaatttatattatca 236  Q
    |||| |||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40419651 gtgacacaattagccaattcagaccgattacaatgtttaacttcaaattcaagattatttctaagattcttgcttatattatctcaaatttatattatca 40419750  T
Q  237 tatcagtgataataatgcattttttacaactcatgtgtatgagttaaaccattaatccattatattat 304  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  40419751 tatcggtgataataatgcatttattacaacttatgtgtatgagttaaaccattaatccattatattat 40419818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 37 - 290
Target Start/End: Original strand, 40421771 - 40422024
Alignment:
Q  37 atattaaagataatttatattatcatatcagcggtaataaattggttactaccaaacttgaattctaacaatttggttctcatcccaaaaactttaaata 136  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||     
T  40421771 atattaaagataatttatattatcatatcaacggtaataaattggttactaccaaacttaaattccaacaatttggttctcatcccaaaaactttaaatg 40421870  T
Q  137 gtgatacaattagccaactcagacctattgcaatggttaacttcaaattcaagattatttctaagattcttgcttatattatctcaaatttatattatca 236  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40421871 gtgatacaattagccaattcagacctactgcaatggctaacttcaaattcaagattatttctaagattctagcttatattatctcaaatttatattatca 40421970  T
Q  237 tatcagtgataataatgcattttttacaactcatgtgtatgagttaaaccatta 290  Q
    |||  ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  40421971 tataggtgataataatgcatttgttacaactcatttgtatgagttaaaccatta 40422024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 304 - 492
Target Start/End: Original strand, 531538 - 531726
Alignment:
Q  304 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  531538 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaatc 531637  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  531638 atgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcataattttaatggttagatttacttgatctctatg 531726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 305 - 491
Target Start/End: Complemental strand, 30945675 - 30945486
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttc---ggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaa 401  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30945675 gggagcttctatgatgaagtcaggaaaatgacttcttcttcggtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcagaaaccctaa 30945576  T
Q  402 tcatgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctat 491  Q
    |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30945575 tcatgttccagtgtagtgcggtctacggtagcgtaagtgaatgaaaactttatttcatgatcttaatggttagatttacttgatctctat 30945486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 305 - 492
Target Start/End: Complemental strand, 3879689 - 3879501
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccct-aatc 403  Q
    ||||||||||| || |||||||| |||| ||||| ||||||||||||||||||||| |||||| |||||| || ||||||||||||||| |||||  ||     
T  3879689 gggagcttctacgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgagccaattagatttcaagtgatgacacgtcagataccctgcatt 3879590  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagt-gaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||   ||| || ||||||||  |||  |||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||    
T  3879589 atgttagtgtgcag-gcggtctacagtactgtaagtagaagaaaaactttatttcatgatcttaatggttagatttacttggtctctatg 3879501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 394
Target Start/End: Complemental strand, 13802901 - 13802812
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaa 394  Q
    ||||||||||| || |||||||| |||||||||| |||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  13802901 gggagcttctacgaagaagtcagtaaaatgactttttcggtaaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaa 13802812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 40422082 - 40422150
Alignment:
Q  222 aaatttatattatcatatcagtgataataatgcattttttacaactcatgtgtatgagttaaaccatta 290  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  40422082 aaattaatattatcatatcagtgataataatgcatttgttacaactcatttgtatgagttaatccatta 40422150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 302 - 492
Target Start/End: Original strand, 12981373 - 12981563
Alignment:
Q  302 tatgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaa 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12981373 tatgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaa 12981472  T
Q  402 tcatgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  12981473 tcatgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcatgattttaatggttagatttacttgatctctatg 12981563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 305 - 492
Target Start/End: Complemental strand, 45348489 - 45348302
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  45348489 gggagcttctatgatgaagtcaggaaaatgatttcttcggtgaagtcgtttgaataggtcaatcagattttaaatgatgacacgtcaaaaaccctaatca 45348390  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  45348389 tgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcatgattttaatggttagatttacttgatctctatg 45348302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 39241555 - 39241643
Alignment:
Q  306 ggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaat-gggccaatcagattttaaatgatgacacgtcaga 393  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||| ||||||||||    
T  39241555 ggagcttctatgaagaagttaggaaaatgacttcttcgatgaagtcgtttgaatggggtcaatcagattttaagtgataacacgtcaga 39241643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 45325822 - 45325765
Alignment:
Q  320 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaa 377  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  45325822 gaagtcaggaaaatgacttcttcagtgcagtcgtttgaatgggccaatcagattttaa 45325765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 27286159 - 27286248
Alignment:
Q  304 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    ||||||||||||||| ||||||  | || |||||| |||||||||||||||| | |  ||||||||||||| ||   |||||||||||||    
T  27286159 tgggagcttctatgaagaagtcgaggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcaga 27286248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 52386035 - 52385966
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattt 374  Q
    |||||||||||||| |||||  ||||| |||||| |||||||||||||||| | |  |||||||||||||    
T  52386035 gggagcttctatgaagaagttgggaaattgactttttcggtgaagtcgtttaattcagccaatcagattt 52385966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 305 - 491
Target Start/End: Original strand, 29243235 - 29243421
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29243235 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcagaaaccctaatca 29243334  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctat 491  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29243335 tgttccagtgtagtgcggtctacggtagcgtaagtgaatgaaaactttatttcatgatcttaatggttagatttacttgatctctat 29243421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 303 - 492
Target Start/End: Original strand, 45972276 - 45972465
Alignment:
Q  303 atgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaat 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45972276 atgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaat 45972375  T
Q  403 catgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  45972376 catgttctagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcatgattttaatggttagatttacttgatctctatg 45972465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 304 - 486
Target Start/End: Original strand, 47327796 - 47327978
Alignment:
Q  304 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatc 403  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| | ||||     
T  47327796 tgggagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagcgatgacacgtcagaaatcttaata 47327895  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatc 486  Q
    ||||| |||||||| || |||||   ||  |||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  47327896 atgttacagtgtagtgcagtctacaatactgtaagtgaagaaaaactttatttcatgatcttaatagttagatttacttgatc 47327978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 34093973 - 34094106
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    ||||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||     ||||||||||||| |   ||||    
T  34093973 gggagcttctacgaagaagtcagaaaaatgacttcttcggtgcagtcgtttgaatgggccaatcagattttaatcctagacacgtcagaaaactgcatca 34094072  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagt 439  Q
    |||| |||||||| ||||||||  ||| |||||||    
T  34094073 tgttacagtgtag-gcggtctacagtaccgtaagt 34094106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 6442492 - 6442564
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaa 377  Q
    ||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  6442492 gggagcttctacgaagaagtcaggaaaatgacttctttggtgcagtcgtttgaatgggccaatcagattttaa 6442564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 393
Target Start/End: Original strand, 29258386 - 29258471
Alignment:
Q  308 agcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    ||||||||||| |||||| || || ||||||||||| || ||| ||||||||||||||||||||||| || |||||||||||||||    
T  29258386 agcttctatgaagaagtcgggcaattgacttcttcgatgcagttgtttgaatgggccaatcagatttcaagtgatgacacgtcaga 29258471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 305 - 492
Target Start/End: Original strand, 20133265 - 20133452
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20133265 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaatca 20133364  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  20133365 tgtttcagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcatgattttaatggttagatttacttgatctctatg 20133452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 305 - 492
Target Start/End: Complemental strand, 55919608 - 55919421
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  55919608 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacatcaaaaaccctaatca 55919509  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  55919508 tgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcatgattttaatagttagatttacttgatctctatg 55919421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 305 - 482
Target Start/End: Complemental strand, 15531433 - 15531255
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccct-aatc 403  Q
    ||||||||||| |  |||||||| |||||||||| ||| |||||||||||||||||  |||||||||||| || |||||| |||||||| |||||  ||     
T  15531433 gggagcttctacggagaagtcagaaaaatgactttttcagtgaagtcgtttgaatgaaccaatcagatttcaagtgatgatacgtcagataccctgcatt 15531334  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagt-gaaggaaaactttatttcatgatcttaatggttagatttactt 482  Q
    ||||| ||||| || ||||| ||  ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  15531333 atgttacagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttactt 15531255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 42069256 - 42069123
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||     ||||||||||||| |   ||||    
T  42069256 gggagcttctatgaagaagtcaggaaaatgacttcttcggtgcagtcgtttgaatgggtcaatcagattttaatcctagacacgtcagaaaactgcatca 42069157  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagt 439  Q
    |||| |||||||| ||||||||  ||| |||||||    
T  42069156 tgttacagtgtag-gcggtctacagtaccgtaagt 42069123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 395
Target Start/End: Complemental strand, 47031669 - 47031579
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaa 395  Q
    ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||    
T  47031669 gggagcttctacgaagaagtcaggaaaatgacttcttcggtgcagtcgtttgaatgggccaatcagattttaaccattgacacgtcagaaa 47031579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 24228365 - 24228277
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||||    
T  24228365 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcaga 24228277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 45989822 - 45989748
Alignment:
Q  303 atgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaa 377  Q
    ||||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  45989822 atgggagcttctacgaagaagtcaggaaaatgacttctttggtgcagtcgtttgaatgggccaatcagattttaa 45989748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 492
Target Start/End: Original strand, 28679488 - 28679550
Alignment:
Q  430 tagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    ||||||||| ||||||| ||||||||| ||||||||||| |||| |||||||||||| |||||    
T  28679488 tagcgtaagggaaggaacactttattttatgatcttaatagttaaatttacttgatctctatg 28679550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 27292942 - 27293028
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 391  Q
    |||||||||||||| |||||| || || |||||| |||||||||||||||| | |  ||||||||||||| ||   |||||||||||    
T  27292942 gggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtca 27293028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 4919011 - 4919060
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtt 354  Q
    |||||||||||||| |||||| || || |||||| |||||||||||||||    
T  4919011 gggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtt 4919060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 305 - 492
Target Start/End: Complemental strand, 39833452 - 39833265
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39833452 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaatca 39833353  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  39833352 tgtttcagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcatgattttaatggttagatttacttgatctctatg 39833265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 302 - 486
Target Start/End: Original strand, 5232798 - 5232982
Alignment:
Q  302 tatgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaa 401  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | | |||    
T  5232798 tatggaagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcagagatcttaa 5232897  T
Q  402 tcatgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatc 486  Q
    | ||||| |||||||| ||||||||   || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  5232898 taatgttacagtgtagtgcggtctacaataccgtaagtgaagaaaaactttatttcatgatcttaatagttagatttacttgatc 5232982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 303 - 486
Target Start/End: Original strand, 20104175 - 20104358
Alignment:
Q  303 atgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaat 402  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  20104175 atgggagcttctacgaagaagtcaggaaaatgactttttcggtgaaatcgtttgaataggccaatcagattttaagtgatgacacgtcagaaatcctaat 20104274  T
Q  403 catgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatc 486  Q
     ||||| |||||||| ||||||||   || ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  20104275 aatgttacagtgtagtgcggtctacaataccgttagtaaagaaaaactttatttcatgatcttaatggttagatttacttgatc 20104358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 305 - 482
Target Start/End: Original strand, 53282148 - 53282326
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccct-aatc 403  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||  ||     
T  53282148 gggagcttctatgaagaagtcagaaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagatttcaagtgatgacacgtcagataccctgcatt 53282247  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagt-gaaggaaaactttatttcatgatcttaatggttagatttactt 482  Q
    |||||   ||| || ||||||||  ||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  53282248 atgttattgtgcag-gcggtctacagtaccgtaagtaaaaggaaaactttatttcattatcttaatggttagatttactt 53282326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 305 - 492
Target Start/End: Complemental strand, 36950380 - 36950192
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccct-aatc 403  Q
    |||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||| |||||  ||     
T  36950380 gggagcttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagataccctgcatt 36950281  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagt-gaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||  |||| || ||| ||||  ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  36950280 atgttagagtgcag-gcgttctacagtaccgtaagtagaaggaaaactttatttcatgatcttaatggttagatttacttggtctctatg 36950192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 305 - 482
Target Start/End: Complemental strand, 29703758 - 29703580
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccct-aatc 403  Q
    ||||||||||| |  |||||||| |||||||||| |||||||||||||||||||||| |||||||||||| || |||||||||||| || |||||  ||     
T  29703758 gggagcttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcggataccctgcatt 29703659  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagt-gaaggaaaactttatttcatgatcttaatggttagatttactt 482  Q
    |||||  |||| || ||||| ||  ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  29703658 atgttatagtgcag-gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttactt 29703580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 33216881 - 33216791
Alignment:
Q  300 attatgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtc 390  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  33216881 attaagggagcttctacgatgaagtcattaaaatgacttcttcggtgaagtcgtttgaatgagccaatcagattttaagtgatgacacgtc 33216791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 394
Target Start/End: Original strand, 29833271 - 29833360
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaa 394  Q
    ||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  29833271 gggagcttctacgaagaagtcagtaaaatgacttctttggtgaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaa 29833360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 12938397 - 12938485
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||||    
T  12938397 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcaga 12938485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 50650614 - 50650525
Alignment:
Q  304 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    ||||||||||||||| |||||| || || |||||| |||||| ||||||||| | |  ||||||||||||| ||   |||||||||||||    
T  50650614 tgggagcttctatgaagaagtcggggaattgactttttcggtaaagtcgtttaattcagccaatcagatttcaagccatgacacgtcaga 50650525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 304 - 492
Target Start/End: Complemental strand, 30929 - 30741
Alignment:
Q  304 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30929 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaatc 30830  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||    
T  30829 atgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaagctttattttatgattttaatggttagatttacttgatctctatg 30741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 304 - 492
Target Start/End: Complemental strand, 24788546 - 24788358
Alignment:
Q  304 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24788546 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaatc 24788447  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||    
T  24788446 atgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaagctttattttatgattttaatggttagatttacttgatctctatg 24788358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 320 - 482
Target Start/End: Original strand, 39884565 - 39884728
Alignment:
Q  320 gaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccct-aatcatgttccagtgtagc 418  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||| ||| |  || ||||| ||||| ||     
T  39884565 gaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcagataccatgcattatgttacagtgcag- 39884663  T
Q  419 gcggtctatggtagcgtaagt-gaaggaaaactttatttcatgatcttaatggttagatttactt 482  Q
    ||||| ||  ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  39884664 gcggtttacagtaccgtaagtagaatgaaaactttatttcatgatcttaatggttagatttactt 39884728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 1828401 - 1828496
Alignment:
Q  298 atattatgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||||    
T  1828401 atatcatgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcaga 1828496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 40313872 - 40313961
Alignment:
Q  304 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||||    
T  40313872 tgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcaga 40313961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 41413665 - 41413576
Alignment:
Q  304 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||||    
T  41413665 tgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcaga 41413576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 394
Target Start/End: Complemental strand, 31482290 - 31482201
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaa 394  Q
    ||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||| ||||||    
T  31482290 gggagcttctacgaagaagtcagtaaaatgacttcttcggtaaagtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaa 31482201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 30624860 - 30624948
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    |||||||||||||| ||||||  |||| |||||| ||  |||||||||||| | |   |||||||||||| || | |||||||||||||    
T  30624860 gggagcttctatgaagaagtcgagaaattgacttttttagtgaagtcgtttaattcaaccaatcagatttcaagtcatgacacgtcaga 30624948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 305 - 492
Target Start/End: Original strand, 17690459 - 17690646
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17690459 gggagcttctatgatgaactcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaatca 17690558  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  17690559 tgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttattttatgattttaatggttagatttacttgatctctatg 17690646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 305 - 492
Target Start/End: Original strand, 15330589 - 15330777
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcag-attttaaatgatgacacgtcagaaaccctaatc 403  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15330589 gggagcttttatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagtattttaaatgatgacacgtcaaaaaccctaatc 15330688  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15330689 atgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcatgattttaatggttagatttacttgatctctatg 15330777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 305 - 492
Target Start/End: Complemental strand, 14810335 - 14810149
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14810335 gggagcttctatgatgaagtcaggaaaatgacttctttggtga-gtcgtttgaatgggccaatcagattttaaatgatgacacgtcaaaaaccctaatca 14810237  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||    
T  14810236 tgttccagtgtagtgcggtctatggtagcgtaagtgaaggaaaactttatttcatgattttaatggttagatttatttgatctctatg 14810149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 310 - 492
Target Start/End: Original strand, 16429724 - 16429906
Alignment:
Q  310 cttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatcatgttc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16429724 cttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaataggccaatcagattttaaatgatgacacgtcaaaaaccctaatcatgttc 16429823  T
Q  410 cagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||||| | |||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  16429824 cagtgtagtgtggtctacggtagcgtaagtgagggaaaactttatttcatgattttaatggttagatttacttgatctctatg 16429906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 305 - 492
Target Start/End: Complemental strand, 37261910 - 37261731
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    |||||||||||||||||||||| |||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37261910 gggagcttctatgatgaagtcatgaaaatgactt--------aagtcgtttgaataggccaatcagattttaaatgatgacacgtcaaaaaccctaatca 37261819  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37261818 tgttccagtgtagtgcggtctacggtagcgtaagtgaaggaaaactttatttcatgattttaatggttagatttacttgatctctatg 37261731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 305 - 486
Target Start/End: Original strand, 37078802 - 37078983
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccctaatca 404  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||| |    
T  37078802 gggagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcagaaatcttaataa 37078901  T
Q  405 tgttccagtgtagcgcggtctatggtagcgtaagtgaaggaaaactttatttcatgatcttaatggttagatttacttgatc 486  Q
    |||| |||||||| ||||||||   || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  37078902 tgttacagtgtagtgcggtctacaataccgtaagtgaagaaaaactttatttcatgatcttaatagttagatttacttgatc 37078983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 305 - 492
Target Start/End: Original strand, 7089079 - 7089267
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccct-aatc 403  Q
    |||||||||||||| |||||||| |||| ||||| |||| ||||||||||||||||||||||| |||||| || ||||||||||||||| |||||  ||     
T  7089079 gggagcttctatgaagaagtcagaaaaacgactttttcgatgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagataccctgcatt 7089178  T
Q  404 atgttccagtgtagcgcggtctatggtagcgtaagt-gaaggaaaactttatttcatgatcttaatggttagatttacttgatccctatg 492  Q
    |||||  |||| || ||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7089179 atgttagagtgcag-gcggtctacagtaccgtaagtagaaggaaaactttatttcatgatcttaatggttagatttacttgatctctatg 7089267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 310 - 483
Target Start/End: Complemental strand, 33755287 - 33755113
Alignment:
Q  310 cttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcagaaaccct-aatcatgtt 408  Q
    ||||||||| |||||||| |||| ||||| ||||||||||||||||||||||| |||| |||||| || ||||||||||||||| |||||  || |||||    
T  33755287 cttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggtcaattagatttcaagtgatgacacgtcagataccctgcattatgtt 33755188  T
Q  409 ccagtgtagcgcggtctatggtagcgtaagt-gaaggaaaactttatttcatgatcttaatggttagatttacttg 483  Q
      |||| || ||||||||  ||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  33755187 agagtgcag-gcggtctagagtaccgtaagtagaagaaaaactttatttcatgatattaatggttagatttacttg 33755113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 305 - 391
Target Start/End: Complemental strand, 18977307 - 18977221
Alignment:
Q  305 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 391  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||| | |  |||||||||||||||| |||||||||||||    
T  18977307 gggagcttctatgaagaagtcaggaaaatgacttcttcgatgaagtcgtttaattcagccaatcagattttaagtgatgacacgtca 18977221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 303 - 393
Target Start/End: Original strand, 14096250 - 14096340
Alignment:
Q  303 atgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtcaga 393  Q
    |||||||||||||||| |||||| || || |||||| |||||||||||||||| | |  ||||||||||||| ||   |||||||||||||    
T  14096250 atgggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagacatgacacgtcaga 14096340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 33694805 - 33694861
Alignment:
Q  333 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgt 389  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  33694805 tgactttttcggtgaagtcgtttgaatggaccaatcagattttaagtgatgacacgt 33694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 28138116 - 28138083
Alignment:
Q  450 tttatttcatgatcttaatggttagatttacttg 483  Q
    |||||||||||||||||| |||||||||||||||    
T  28138116 tttatttcatgatcttaaaggttagatttacttg 28138083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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