View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_16 (Length: 471)
Name: NF18302_low_16
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 23 - 453
Target Start/End: Complemental strand, 27171431 - 27171003
Alignment:
| Q |
23 |
tgatgacttccatcatctccagatttaaagacttgcgcatcatcattctttgtttttgaaacacctttaacttcatacgtcttgtgaagctctttaagtc |
122 |
Q |
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| T |
27171431 |
tgatgacttccaccatctctagctttaaagacttgcgcatcatcattctttgtttttgaaacatctttaacttcatacgtcttgtgaagctctttaagtc |
27171332 |
T |
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| Q |
123 |
ttgaagcaaaatcaatcttaatgttgtttctgtattcttcatcggttgtatttgctttagggttggagcaccgatttcccatactgtcaaaaactttacg |
222 |
Q |
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| T |
27171331 |
ttgaagcaaaatcaatcttaatgttgtttctgtattcttcttcggttgtatttgctttagggttggagcaccgatttcccatactgtcaaaaactttacg |
27171232 |
T |
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| Q |
223 |
aggnnnnnnnttgtgttgtgattttcacaaagttattattggtataaataaatatacaagtgaggtaacaaactagcgtaacaaactgagcattagaatg |
322 |
Q |
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| T |
27171231 |
aggataaaaattgtgttgtgattttcacaaagtta----tggtataaataaatatacaagtgaggtaacaaactagcgtaacaaattgagcattagaatg |
27171136 |
T |
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| Q |
323 |
tatctctatatttactgatagatc-tttatattgcgttaatttgagtctatc-nnnnnnnnnattgttttgaaagcggttaatttgaatctatctcttaa |
420 |
Q |
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||||||||||||| |||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27171135 |
tatctctatatttgctgataaatcttttatattgcgttaatttgaatctatctttttttttttttgttttgaaagcggttaatttgaatctatctcttaa |
27171036 |
T |
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| Q |
421 |
tcgtatctatctccctttaatttagtgcttgct |
453 |
Q |
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| T |
27171035 |
tcgtatctatctccctttaatttactgcttgct |
27171003 |
T |
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