View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18302_low_20 (Length: 404)

Name: NF18302_low_20
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18302_low_20
NF18302_low_20
[»] chr1 (11 HSPs)
chr1 (10-269)||(35215815-35216072)
chr1 (270-387)||(35215606-35215723)
chr1 (119-210)||(35207781-35207872)
chr1 (10-99)||(35190371-35190460)
chr1 (17-105)||(35147357-35147445)
chr1 (173-210)||(35247611-35247648)
chr1 (147-198)||(35189915-35189966)
chr1 (208-242)||(35207674-35207708)
chr1 (14-91)||(35208145-35208225)
chr1 (166-210)||(35199449-35199493)
chr1 (49-97)||(35199933-35199981)
[»] chr3 (1 HSPs)
chr3 (60-96)||(53924390-53924426)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 35216072 - 35215815
Alignment:
Q  10 agatgaagtcccgatgaatgttaagcagagagattattggaagaatgatctcttgcttgcaggaatagaagttaggcctaagtaagaccagtaagctgga 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35216072 agatgaagtcctgatgaatgttaagcagagagattattggaagaaagatctcttgcttgcaggaatagaagttaggcctaagtaagaccagtaagctgga 35215973  T
Q  110 acataaaacgaagaaggaccgacactccattccgcattcactagtctgtgatagaatgtgcttgagtaacaatattgattaaaatggaaccaatgcctta 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  35215972 acataaaacgaagaaggaccgacactccattccgcattcactagtctgtgatagaatgtgcttgagtaacaatattgatt-aaatggaaccaatg-ctta 35215875  T
Q  210 atggtatgaatgaattaaaatataaatctaagtacagaagactaaaaagactccatttaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35215874 atggtatgaatgaattaaaatataaatctaagtacagaagactaaaaagactccatttaa 35215815  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 35215723 - 35215606
Alignment:
Q  270 tgatagaattatgatgagcaattgtgatttggccaaagctacattttagagtttttacaaaatcacgatgttaaggtgatttcaagaaactcaaatggga 369  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  35215723 tgatagaattacgatgagcaattgtgatttggccaatgctacattttagagtttttacaaaatcatgatgttaaggtgatttcaagtaactcaaatggga 35215624  T
Q  370 taccatacggcatacatg 387  Q
    ||||||||||||||||||    
T  35215623 taccatacggcatacatg 35215606  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 35207872 - 35207781
Alignment:
Q  119 gaagaaggaccgacactccattccgcattcactagtctgtgatagaatgtgcttgagtaacaatattgattaaaatggaaccaatgccttaa 210  Q
    ||||||||| |||| |||| | | |||  ||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||    
T  35207872 gaagaaggatcgactctccttccggcaggcactagtctgtgatagactgtgcttaagtaacaatattgatttaaatggaagcaatgccttaa 35207781  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 35190460 - 35190371
Alignment:
Q  10 agatgaagtcccgatgaatgttaagcagagagattattggaagaatgatctcttgcttgcaggaatagaagttaggcctaagtaagacca 99  Q
    |||||||||||  |||||||||||| ||| | || |||||||||  | |||||| |||| ||||||||||||||||||||||||||||||    
T  35190460 agatgaagtccaaatgaatgttaaggagacaaataattggaagagaggtctctttcttgaaggaatagaagttaggcctaagtaagacca 35190371  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 35147445 - 35147357
Alignment:
Q  17 gtcccgatgaatgttaagcagagagattattggaagaatgatctcttgcttgcaggaatagaagttaggcctaagtaagaccagtaagc 105  Q
    |||| ||||||||||||| ||| | || ||||||||| || ||||||  ||| |||||||||||||||||||||||||||||| |||||    
T  35147445 gtcctgatgaatgttaaggagacaaataattggaagagtggtctctttgttgaaggaatagaagttaggcctaagtaagaccattaagc 35147357  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 35247611 - 35247648
Alignment:
Q  173 gagtaacaatattgattaaaatggaaccaatgccttaa 210  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35247611 gagtaacaatattgattaaaatagaaccaatgccttaa 35247648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 35189966 - 35189915
Alignment:
Q  147 tcactagtctgtgatagaatgtgcttgagtaacaatattgattaaaatggaa 198  Q
    |||||||| |||||||||  |||||||||||||| |||||||| ||||||||    
T  35189966 tcactagtttgtgatagatcgtgcttgagtaacagtattgatttaaatggaa 35189915  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 35207708 - 35207674
Alignment:
Q  208 taatggtatgaatgaattaaaatataaatctaagt 242  Q
    |||| ||||||||||||||||||||||||||||||    
T  35207708 taatagtatgaatgaattaaaatataaatctaagt 35207674  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 35208225 - 35208145
Alignment:
Q  14 gaagtcccgatgaatgttaagcagagagattattggaagaatgatctcttgcttgcagg---aatagaagttaggcctaag 91  Q
    ||||||| ||||||||||||| ||| | ||||||||||||| | |||||| || | |||   |||||||||||||||||||    
T  35208225 gaagtccagatgaatgttaaggagacaaattattggaagaaaggtctctttctagaaggaataatagaagttaggcctaag 35208145  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 35199493 - 35199449
Alignment:
Q  166 tgtgcttgagtaacaatattgattaaaatggaaccaatgccttaa 210  Q
    |||||||||||||||||||||||| || ||||| ||||| |||||    
T  35199493 tgtgcttgagtaacaatattgatttaagtggaagcaatgtcttaa 35199449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 35199981 - 35199933
Alignment:
Q  49 gaagaatgatctcttgcttgcaggaatagaagttaggcctaagtaagac 97  Q
    ||||| || |||||| |||| |||||||||||| |||||||||||||||    
T  35199981 gaagagtggtctctttcttgaaggaatagaagtcaggcctaagtaagac 35199933  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 53924390 - 53924426
Alignment:
Q  60 tcttgcttgcaggaatagaagttaggcctaagtaaga 96  Q
    |||| |||| |||||||||||||||||||||||||||    
T  53924390 tctttcttgaaggaatagaagttaggcctaagtaaga 53924426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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