View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_26 (Length: 292)
Name: NF18302_low_26
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 35341353 - 35341078
Alignment:
| Q |
1 |
attatgtcattttgtcatatctcttttgttacttcacatccttataaatgttgctgcatgtacagaagtaatttttatgtaatgttcctcattttgattc |
100 |
Q |
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| T |
35341353 |
attatgtcattttgtcatatctcttttgttacttcacatccttataaatgttgctgcatgtacagaagtaatttttatgtaatgttcctcattttgattc |
35341254 |
T |
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| Q |
101 |
tgtttttcatgaacttcagctcaaattgaaaaatggtgcagagatcgatgtcatgaaacaacaaactggaggtggtgatgaagctttgtaagcgggagga |
200 |
Q |
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| T |
35341253 |
tgtttttcatgaacttcagctcaaattgaaaaatggtgcagagatcgatgtcatgaaacaacaaactggaggtggtgatgaagctttgtaagcgggagga |
35341154 |
T |
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| Q |
201 |
aattaaatggtttaggagtgagcttaatataaattgtgaatttgtttgttcactatcattgtggtacatgatcaca |
276 |
Q |
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| T |
35341153 |
aattaaatggtttaggagcgagcctaatataaattgtgaatttgtttgttcactatcattgtggtacatgatcaca |
35341078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 35353694 - 35353598
Alignment:
| Q |
114 |
cttcagctcaaattgaaaaatggtgcagagatcgatgtcatgaaacaacaaactggaggtggtgatgaagctttgtaagcgggaggaaattaaatgg |
210 |
Q |
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| T |
35353694 |
cttcagctgaatttgaaaaatggtgacacgattgatgccatgaaacaccaatcaggaggtggtgttgtagctatgtaagttggaggaaattaaatgg |
35353598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 15492670 - 15492823
Alignment:
| Q |
123 |
aaattgaaaaatggtgcagagatcgatgtcatgaaacaacaaactggaggtggtgatgaagctttgtaagcgggaggaaattaaatggtttaggagtgag |
222 |
Q |
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| T |
15492670 |
aaattggaaaatggtgcagagatcgatggcatgaaacagcaaacaggcggcggtgatgcagctctgtaagttgga-gaaattaaatggttaagcagtgag |
15492768 |
T |
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| Q |
223 |
cttaatataaattgtgaatttgtttgtt-cactatcattgtggtacatgatcaca |
276 |
Q |
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| T |
15492769 |
cttaacatgaattgtgaatttgtttgttagactattattgtggtacatgatcaca |
15492823 |
T |
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