View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18302_low_28 (Length: 291)

Name: NF18302_low_28
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18302_low_28
NF18302_low_28
[»] chr2 (4 HSPs)
chr2 (18-93)||(12755754-12755829)
chr2 (228-281)||(12757217-12757270)
chr2 (172-214)||(32699789-32699831)
chr2 (166-218)||(12757123-12757175)
[»] chr7 (2 HSPs)
chr7 (168-214)||(44718831-44718877)
chr7 (177-214)||(31723422-31723459)
[»] chr5 (1 HSPs)
chr5 (169-214)||(12285620-12285665)
[»] chr1 (4 HSPs)
chr1 (177-214)||(12664669-12664706)
chr1 (170-211)||(32969668-32969709)
chr1 (170-214)||(42577204-42577248)
chr1 (170-210)||(47835737-47835777)
[»] chr4 (4 HSPs)
chr4 (166-214)||(41536917-41536965)
chr4 (166-214)||(44918231-44918279)
chr4 (182-215)||(54103324-54103357)
chr4 (170-214)||(51298714-51298758)
[»] scaffold0121 (1 HSPs)
scaffold0121 (172-213)||(2376-2417)
[»] chr3 (2 HSPs)
chr3 (169-210)||(37436957-37436998)
chr3 (166-214)||(38330770-38330818)
[»] chr8 (1 HSPs)
chr8 (170-214)||(10967211-10967255)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 12755754 - 12755829
Alignment:
Q  18 gattagatgtaaccaaataattaaacatgctagaggttgcaaactgtatcgattgtgtatatttgtgtacaaagaa 93  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12755754 gattagatgtaaccaaatgattaaacatgctagaggttgcaaactgtatcgattgtgtatatttgtgtacaaagaa 12755829  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 12757217 - 12757270
Alignment:
Q  228 ccatctaatgataacacttgagagtcctgagaagcccttgatcctctccctttg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12757217 ccatctaatgataacacttgagagtcctgagaagcccttgatcctctccttttg 12757270  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 32699831 - 32699789
Alignment:
Q  172 tgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    |||||||||||||||||||||| |||| | |||||||||||||    
T  32699831 tgaatttaactcaattgataaagacaaaacataatatatgcaa 32699789  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 12757123 - 12757175
Alignment:
Q  166 tcttcgtgaatttaactcaattgataaaaacaatatataatatatgcaattct 218  Q
    ||||| ||||||||||||| ||| ||| |||||| |||||||||||| |||||    
T  12757123 tcttcatgaatttaactcagttggtaagaacaatgtataatatatgccattct 12757175  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 44718877 - 44718831
Alignment:
Q  168 ttcgtgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  44718877 ttcgtgagtttaactcaattgatataaacaatatataatatatgcaa 44718831  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 31723459 - 31723422
Alignment:
Q  177 ttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  31723459 ttaactcagttgataagaacaatatataatatatgcaa 31723422  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 12285665 - 12285620
Alignment:
Q  169 tcgtgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||    
T  12285665 tcgtgaacttaactcagttgataaagacaatatataatatatgcaa 12285620  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 12664669 - 12664706
Alignment:
Q  177 ttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    |||||||||||| |||||||||||||||||||||||||    
T  12664669 ttaactcaattgctaaaaacaatatataatatatgcaa 12664706  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 32969709 - 32969668
Alignment:
Q  170 cgtgaatttaactcaattgataaaaacaatatataatatatg 211  Q
    ||||||||||  ||| ||||||||||||||||||||||||||    
T  32969709 cgtgaatttaggtcagttgataaaaacaatatataatatatg 32969668  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 42577204 - 42577248
Alignment:
Q  170 cgtgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    ||||||||||||||| ||||||||||||  |||||||| ||||||    
T  42577204 cgtgaatttaactcagttgataaaaacataatataatacatgcaa 42577248  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 47835777 - 47835737
Alignment:
Q  170 cgtgaatttaactcaattgataaaaacaatatataatatat 210  Q
    ||||| ||||||||| ||||||||||||||| |||||||||    
T  47835777 cgtgagtttaactcagttgataaaaacaatacataatatat 47835737  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 41536917 - 41536965
Alignment:
Q  166 tcttcgtgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    ||||||||| |||||||||||||||||  |||||| |||||||||||||    
T  41536917 tcttcgtgagtttaactcaattgataaggacaatacataatatatgcaa 41536965  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 44918279 - 44918231
Alignment:
Q  166 tcttcgtgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    ||||||||| ||||||||| |||||| | ||||||||||||||||||||    
T  44918279 tcttcgtgagtttaactcagttgatagagacaatatataatatatgcaa 44918231  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 54103357 - 54103324
Alignment:
Q  182 tcaattgataaaaacaatatataatatatgcaat 215  Q
    |||||||||||||||||| |||||||||||||||    
T  54103357 tcaattgataaaaacaatgtataatatatgcaat 54103324  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 51298758 - 51298714
Alignment:
Q  170 cgtgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    |||||| |||||||| |||||||  ||||||||||||||||||||    
T  51298758 cgtgaacttaactcagttgataaggacaatatataatatatgcaa 51298714  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 2417 - 2376
Alignment:
Q  172 tgaatttaactcaattgataaaaacaatatataatatatgca 213  Q
    |||| ||||||||||||||| |||||||| ||||||||||||    
T  2417 tgaacttaactcaattgatataaacaataaataatatatgca 2376  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 37436957 - 37436998
Alignment:
Q  169 tcgtgaatttaactcaattgataaaaacaatatataatatat 210  Q
    ||||||| |||||||| |||||||||||||| ||||||||||    
T  37436957 tcgtgaacttaactcacttgataaaaacaatgtataatatat 37436998  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 38330818 - 38330770
Alignment:
Q  166 tcttcgtgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    |||||||||  ||| |||||||| || ||||||||||||||||||||||    
T  38330818 tcttcgtgagcttagctcaattggtataaacaatatataatatatgcaa 38330770  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 10967211 - 10967255
Alignment:
Q  170 cgtgaatttaactcaattgataaaaacaatatataatatatgcaa 214  Q
    ||||| ||||||||||||||||| ||||||  |||||||||||||    
T  10967211 cgtgagtttaactcaattgataagaacaatgcataatatatgcaa 10967255  T

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