View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18302_low_3 (Length: 846)
Name: NF18302_low_3
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 748; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 13 - 828
Target Start/End: Original strand, 6969053 - 6969869
Alignment:
| Q |
13 |
agcagagatgaaggctgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaatatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969053 |
agcagagatgaaggctgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaatatt |
6969152 |
T |
|
| Q |
113 |
gctagttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttagatta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6969153 |
gctagttattttatattagagtcttattaaaacattagtatgaatctctatttctatgcttacattcgagtcttaatttactttattataagttagatta |
6969252 |
T |
|
| Q |
213 |
atatgctaaggttgaaacattgttggtgattatgctgaattacaaactaaacaatgtacttcaggccttataacaaagtaggttgaatatttagtaccat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969253 |
atatgctaaggttgaaacattgttggtgattatgctgaattacaaactaaacaatgtacttcaggccttataacaaagtaggttgaatatttagtaccat |
6969352 |
T |
|
| Q |
313 |
taaaaagatggttaacaatgttgaattataaatatgtttagtttgcattgcaagttttatgtgtgtgcttttatatgtttgttgatacctgataccctat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969353 |
taaaaagatggttaacaatgttgaattataaatatgtttagtttgcagtgcaagttttatgtgtgtgcttttatatgtttgttgatacctgataccctat |
6969452 |
T |
|
| Q |
413 |
tttgttttgttcttctgatagcatattaccatactattctgcaagtcattaaataaatagtttttagcttaaaaaactttatcatgttagcttttatcct |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969453 |
tttgttttgttcttctgatagcatattaccatactattctgcaagtcattaaataaatagtttttagcttaaaaaactttatcatgttagcttttatcct |
6969552 |
T |
|
| Q |
513 |
aggtattaaaagattattataaatatttctttgaggaatatggatggtttacacatctatcctcctcaggtactatttcaaacaggtagtaatactttag |
612 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969553 |
aggtattaaaagattattataaatacttctttgaggaatatggatggtttacacatctatcctcctcaggtactatttcaaacaggtagtaatactttag |
6969652 |
T |
|
| Q |
613 |
gttcttttgtaaattaaaatctcattttcatattggcctttacatgaggnnnnnnntaaataaatgaatgacacataaagaagcaccannnnnnnnataa |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6969653 |
gttcttttgtaaattaaaatctcattttcatattggcctttacatgaggaaaaaaataaataaatgaatgacacataaagaagcaccattttttttataa |
6969752 |
T |
|
| Q |
713 |
taaaagccagatctgatttcatcttatctgatgccttttcaatctttcctaagaccaaacaaaaaggaaatgatgtaatacaaacaagtca-tgatccat |
811 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6969753 |
taaaagccagatctgatttcatcttatctgatgccttttcaatctttcctaagaccaaacaaaaaggaaatgatgtaatacaaacaagtcattgatccat |
6969852 |
T |
|
| Q |
812 |
aatacctacccccaaat |
828 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6969853 |
aatacctacccccaaat |
6969869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 1000088 - 999959
Alignment:
| Q |
99 |
tcctaggcaatattgctagttattttatatt--agagtcttattaaaa------cattactatgaatctctatttctatgcttacattagagtcttaatt |
190 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||||||||| ||||| ||| | | |||||||||||||||||||||| ||||| ||| |
|
|
| T |
1000088 |
tcctaggcaatattgctggttattttatattttagggtcttattaaaattaaaacattagtat-agtatctatttctatgcttacattagtgtcttgatt |
999990 |
T |
|
| Q |
191 |
tactttattataagttagattaatatgctaa |
221 |
Q |
| |
|
||| ||| |||||||||||||||| |||||| |
|
|
| T |
999989 |
tacattaatataagttagattaatgtgctaa |
999959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 2178425 - 2178513
Alignment:
| Q |
127 |
attagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttagattaatat |
216 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||| |||||||||||| | ||||| |||| ||||||| |||||||||||||| |
|
|
| T |
2178425 |
attagagtcgtattaaaacattagtatgaatatctatttccatgcttacattacattcttattttagattattat-agttagattaatat |
2178513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 1000206 - 1000130
Alignment:
| Q |
13 |
agcagagatgaaggctgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaag |
89 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
1000206 |
agcagagatgaaggttgagaaagaaaaggggactagtgaagaggattcactagaggaggaggcagaagatgcagaag |
1000130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 51315915 - 51315840
Alignment:
| Q |
118 |
ttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttac |
193 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||| ||||||| |||||||| ||| ||||| |||||||||| ||||| |
|
|
| T |
51315915 |
ttattttgcattagagtcttatgaaaacgttaatatgaatatctatttccatgtttacaatagagtcttattttac |
51315840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 51316032 - 51315982
Alignment:
| Q |
32 |
aaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagat |
82 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
51316032 |
aaagaagaagggactagtggagaggattcatcagagaaggaggcagaagat |
51315982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University