View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18302_low_30 (Length: 269)
Name: NF18302_low_30
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 58 - 251
Target Start/End: Original strand, 37782829 - 37783022
Alignment:
| Q |
58 |
aacacaattcatgctcagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcgg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37782829 |
aacacaattcatgctcagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcgg |
37782928 |
T |
|
| Q |
158 |
ttacgatatcagacttcttactattgcttattcggtatgctcgtagaaactcaatcaatcaaaccacttcaagttttttatttgagataggtag |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37782929 |
ttacgatatcagacttcttactattgcttattcggtatgctcgtagaaactcaatcaatcaaaccaattcaagttttttatttgagataggtag |
37783022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 37808212 - 37808350
Alignment:
| Q |
64 |
attcatgctcagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacga |
163 |
Q |
| |
|
||||||||||||||||| ||||| |||||| ||| |||||||||||||| ||||||||||| ||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
37808212 |
attcatgctcagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcgatagggattggaccgaatggaagctgggttacga |
37808311 |
T |
|
| Q |
164 |
tatcagacttcttactattgcttattcggtatgctcgta |
202 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
37808312 |
tatcaggcttctcactatggcttattcggtatgctcgta |
37808350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 37782793 - 37782732
Alignment:
| Q |
4 |
taaagttaatggaccataacatgcaaaacaactcatatatcatatattcatataaacacaat |
65 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37782793 |
taaacttaatggaccataacatgcaaaacaactcatatatcatatattcatataaacacaat |
37782732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 37792208 - 37792320
Alignment:
| Q |
87 |
acaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagacttcttactattgctt |
186 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||| ||||| | || ||||||| || ||||||||||| |||||| ||||||||||||| | | |||| |
|
|
| T |
37792208 |
acaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagctt |
37792307 |
T |
|
| Q |
187 |
attcggtatgctc |
199 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37792308 |
attcggtatgctc |
37792320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 37801900 - 37802012
Alignment:
| Q |
87 |
acaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagacttcttactattgctt |
186 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||| ||||| | || ||||||| || ||||||||||| |||||| ||||||||||||| | | |||| |
|
|
| T |
37801900 |
acaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagctt |
37801999 |
T |
|
| Q |
187 |
attcggtatgctc |
199 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37802000 |
attcggtatgctc |
37802012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University