View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18302_low_32 (Length: 254)
Name: NF18302_low_32
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_32 |
 | |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0001 (8 HSPs) |
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| [»] scaffold0292 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 2038058 - 2037811
Alignment:
| Q |
7 |
gtgaaaagaataggaaccgaataactctctcactcactaacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2038058 |
gtgaaaagaataggaaccgaataactctctcactcactaacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcata |
2037959 |
T |
|
| Q |
107 |
tgaacatggaagaggttgtatctcctactttctagtaatgaataaacatgattgtgtgcttcctaactagtaactagcataaaactagaaacaattataa |
206 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2037958 |
tgaacatggaagaagttgtatcttatactttctagtaataaataaacatgatcgtgtgcttcctaactagtaactagcataaaactagaaacaattataa |
2037859 |
T |
|
| Q |
207 |
taaaactaagttagtaacttaataaatgacaccaatttttcctactct |
254 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2037858 |
taaaattaagttagtaacttaataaatgacaccaatttttcctactct |
2037811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 254
Target Start/End: Complemental strand, 6816934 - 6816709
Alignment:
| Q |
27 |
ataactctctcactcactaacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaggttgta |
126 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||| ||||| |
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| T |
6816934 |
ataactctctcactcactaccttccttgctaaaaatgtggaactaattcatggagtggaaagtggtgtgtcatggtcatatgaacc--gaagaaattgta |
6816837 |
T |
|
| Q |
127 |
tctcctactttctagtaatgaataaacatgattgtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaactt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6816836 |
tctcctactttctagtaatgaataaacatgatcatgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaactt |
6816737 |
T |
|
| Q |
227 |
aataaatgacaccaatttttcctactct |
254 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
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|
| T |
6816736 |
aataaatgtcaccaatttttcctactct |
6816709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 44667727 - 44667517
Alignment:
| Q |
41 |
cactaacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaggttgtatctcctactttcta |
140 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||| |
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|
| T |
44667727 |
cactaactctcttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatataaacagggaagaagttgtatctcctactttcta |
44667628 |
T |
|
| Q |
141 |
gtaatgaataaacatgattgtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaatgacacca |
240 |
Q |
| |
|
||||||||| || |||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||| |
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| T |
44667627 |
gtaatgaatgaaaatgagtgtgtgcttcctaaccggtaaatagcataaaattagaaacaattataataaaactacatcagtaacttaataaatgtcaccc |
44667528 |
T |
|
| Q |
241 |
atttttcctac |
251 |
Q |
| |
|
||||| ||||| |
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|
| T |
44667527 |
attttacctac |
44667517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 34518796 - 34519010
Alignment:
| Q |
26 |
aataactctctcactcactaacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaggttgt |
125 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |
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|
| T |
34518796 |
aataactctttcactcgctaacttccttgctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatgaaa---------gttgt |
34518886 |
T |
|
| Q |
126 |
atctcctactttctagtaatgaataaacatgattgtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaact |
225 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34518887 |
atctcctactttctagtaatgaataaatatgatcgtgtgcttcctaactagtaactaacataaa-ctagaaacaattataataaaactaagttagtaact |
34518985 |
T |
|
| Q |
226 |
taataaatgacaccaatttttccta |
250 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
34518986 |
taataaatgtcaccaatttttccta |
34519010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 21508435 - 21508335
Alignment:
| Q |
102 |
tcatatgaacatggaagaggttgtatctcctactttctagtaatgaataaacatgattgtgtgcttcctaactagtaactagcataaaactagaaacaat |
201 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||| |||||||| |||||| || || ||||||||||||| |||||||||| | ||||||| |
|
|
| T |
21508435 |
tcatatgaatagggaagaagttgtatctcctactttttagtaatg----aacatggacgtatgtttcctaactagtaggtagcataaaatcaaaaacaat |
21508340 |
T |
|
| Q |
202 |
tataa |
206 |
Q |
| |
|
||||| |
|
|
| T |
21508339 |
tataa |
21508335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 44 - 254
Target Start/End: Original strand, 28657518 - 28657731
Alignment:
| Q |
44 |
taacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaggttgtatctcctactttctagta |
143 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||| | |||||| | ||||||||||||||||||||| |
|
|
| T |
28657518 |
taacttctttcctaaaaaagtggaactaaatcatggagtggaaagtggtgtgtcgtggtcatatgaataaggaagaagctgtatctcctactttctagta |
28657617 |
T |
|
| Q |
144 |
atgaataaa----catgattgtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaatgacacc |
239 |
Q |
| |
|
||||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28657618 |
gtgaatgaatgatcatgaccgtgttcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaatgtcacc |
28657717 |
T |
|
| Q |
240 |
aatttttcctactct |
254 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
28657718 |
ca-ttttcctactct |
28657731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 28387170 - 28387029
Alignment:
| Q |
45 |
aacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaggttgtatctcctactttctagtaa |
144 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||| ||||||| | ||||||||| | |||||| ||||||||| ||||||||||||| |
|
|
| T |
28387170 |
aacttccttcctaaaataatggaactaaatcatggagtggaaagtgatgtgtcacggtcatatgaataaggaagaagttgtatctactactttctagtat |
28387071 |
T |
|
| Q |
145 |
tgaataaacatgattgtgtgcttcctaactagtaactagcat |
186 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
28387070 |
ggaatgaacatgaacgtgtgctttctaactagcgactagcat |
28387029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 28382816 - 28382724
Alignment:
| Q |
45 |
aacttccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaggttgtatctcctacttt |
137 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
28382816 |
aacttccttcctaaaatagtggaactaaatcatggagtggaaagtggtgtgtcacggtcatatgaacagggaagaagttgtatctcctacttt |
28382724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 28382596 - 28382464
Alignment:
| Q |
121 |
gttgtatctcctactttctagtaatgaataaacatgattgtgtgcttcctaactagtaactagcataaaactagaaac-------aattataataaaact |
213 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||| |||||||| ||||||||| ||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
28382596 |
gttgtatctcctactttctaatattgaaggaacatgaacgtgtgctttctaactagtgactagcataaaactataaacaatatataattatagtaaaact |
28382497 |
T |
|
| Q |
214 |
aagttagtaacttaataaatgacaccaattttt |
246 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| |
|
|
| T |
28382496 |
aagttagtaacttattaaatgacacccattttt |
28382464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 28386978 - 28386931
Alignment:
| Q |
199 |
aattataataaaactaagttagtaacttaataaatgacaccaattttt |
246 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
28386978 |
aattatagtaaaactaagatagtaacttaataaatgacacccattttt |
28386931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 24524 - 24453
Alignment:
| Q |
149 |
taaacatgattgtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaac |
224 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
24524 |
taaacataaatgtgtgcttcctaactagtaac----ataaaactagaaacaattatattaaaactatgttagtaac |
24453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 28022 - 27951
Alignment:
| Q |
149 |
taaacatgattgtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaac |
224 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
28022 |
taaacataaatgtgtgcttcctaactagtaac----ataaaactagaaacaattatattaaaactatgttagtaac |
27951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 14609 - 14541
Alignment:
| Q |
160 |
gtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaa |
232 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
14609 |
gtgtgcttcctaacttgtaac----atcaaactagaaacaattataataaaactatgttagtaactttataaa |
14541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 16099 - 16031
Alignment:
| Q |
160 |
gtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaa |
232 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
16099 |
gtgtgcttcctaacttgtaac----atcaaactagaaacaattataataaaactatgttagtaactttataaa |
16031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 17591 - 17523
Alignment:
| Q |
160 |
gtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaa |
232 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
17591 |
gtgtgcttcctaacttgtaac----atcaaactagaaacaattataataaaactatgttagtaactttataaa |
17523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 19081 - 19013
Alignment:
| Q |
160 |
gtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaa |
232 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
19081 |
gtgtgcttcctaacttgtaac----atcaaactagaaacaattataataaaactatgttagtaactttataaa |
19013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 20574 - 20505
Alignment:
| Q |
160 |
gtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaa |
232 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
20574 |
gtgtgcttcctaacta---agtaacataaaactagaaacaattataataaaactatgttaataactttataaa |
20505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 13089 - 13021
Alignment:
| Q |
160 |
gtgtgcttcctaactagtaactagcataaaactagaaacaattataataaaactaagttagtaacttaataaa |
232 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
13089 |
gtgtgctttttaactagtaact----taaaactagaaacaattataataaaactatgtttttaactttataaa |
13021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0292 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0292
Description:
Target: scaffold0292; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 21400 - 21352
Alignment:
| Q |
184 |
cataaaactagaaacaattataataaaactaagttagtaacttaataaa |
232 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
21400 |
cataaaactaaaaacaattataataaaactatgttagtaactttataaa |
21352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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