View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_38 (Length: 236)
Name: NF18302_low_38
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 16162474 - 16162266
Alignment:
| Q |
18 |
tcagctatatttaaaataacaaagaacaaatgaaattttcaattagacatgtatcaacatttaaaattattgattttaattataacaactatttaaaata |
117 |
Q |
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| T |
16162474 |
tcagctatatttaaaataacaacgagcaaataaaattttcaattagacatgtatcaacatttaaaattattgattttaattataacaactatttaaaata |
16162375 |
T |
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| Q |
118 |
gactatgttaaaggtcttggtagcaatgnnnnnnncttgttgttgtgggttttaatttaagaa--agnnnnnnnnngagttgtaaaattacctatgaaat |
215 |
Q |
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| T |
16162374 |
gactatgttaaaggtcttggtagcaatgtttttttcttgttgttgtggtttttaatttaagaaacaataaaaaaaagagttgtaaaattacctatgaaat |
16162275 |
T |
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| Q |
216 |
ctatgatga |
224 |
Q |
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||||||||| |
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| T |
16162274 |
ctatgatga |
16162266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 31094665 - 31094747
Alignment:
| Q |
56 |
tcaattagacatgtatcaacatttaaaattattgattttaattataacaactatttaaaatagactatgttaaaggtcttggt |
138 |
Q |
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| T |
31094665 |
tcaatcagaaatgtatcaacattgaaaattactgattttaataataacaactatataaaatagattattttagagttcttggt |
31094747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 27205781 - 27205736
Alignment:
| Q |
72 |
caacatttaaaattattgattttaattataacaactatttaaaata |
117 |
Q |
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| T |
27205781 |
caacattaaaatttattgattttaattataacaactatgtaaaata |
27205736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 31251729 - 31251674
Alignment:
| Q |
48 |
tgaaattttcaattagacatgtatcaacatttaaaattattgattttaattataac |
103 |
Q |
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| T |
31251729 |
tgaaattttcaatcggaaatgtatcaaccataaaaattattgattttaattataac |
31251674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 27228346 - 27228318
Alignment:
| Q |
196 |
tgtaaaattacctatgaaatctatgatga |
224 |
Q |
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| T |
27228346 |
tgtaaaattacctatgaaatctatgatga |
27228318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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