View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_39 (Length: 232)
Name: NF18302_low_39
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_39 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 10893041 - 10893256
Alignment:
| Q |
17 |
gttctaaataaactgctctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaataattttattatgt |
116 |
Q |
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| T |
10893041 |
gttctaaataaactgctctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaataattttattatgt |
10893140 |
T |
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| Q |
117 |
ggttgtatatctttcgcttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtaggttgctt |
216 |
Q |
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| T |
10893141 |
ggttgtatatctttcgcttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtaggttgctt |
10893240 |
T |
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| Q |
217 |
gatgatgtccatctca |
232 |
Q |
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| T |
10893241 |
gctgatgttcatctca |
10893256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 8865444 - 8865643
Alignment:
| Q |
33 |
tctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaataattttattatgtggttgtatatctttcg |
132 |
Q |
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| T |
8865444 |
tctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatatttggtataaataattttattatgtggttgtatatctttcg |
8865543 |
T |
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| Q |
133 |
cttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtaggttgcttgatgatgtccatctca |
232 |
Q |
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| T |
8865544 |
cttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtaggttgcttgctgatgttcatctca |
8865643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 11127314 - 11127114
Alignment:
| Q |
33 |
tctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaataattttattatgtggttgtatatctttcg |
132 |
Q |
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| T |
11127314 |
tctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaataattttattatgtggttgtatatctttcg |
11127215 |
T |
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| Q |
133 |
cttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgc-ttcttgttgtgtaggttgcttgatgatgtccatctc |
231 |
Q |
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| T |
11127214 |
cttcatcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgctttcttgttgtgtaggttgcttgctgatgttcatctc |
11127115 |
T |
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| Q |
232 |
a |
232 |
Q |
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| T |
11127114 |
a |
11127114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 11156158 - 11155989
Alignment:
| Q |
65 |
gtgttgtaacattcattttattacatattcagtata--aataattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccg |
162 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| | ||| |||||||| ||| || |
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| T |
11156158 |
gtgttgtaacattcattttattacatattcggtatataaataattttattatgcggttgtatatctttcacttcctcgtaaaattattcaagttccacca |
11156059 |
T |
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| Q |
163 |
ctgcacttttccttttcctggactcatacttgcttcttgttgtgtaggttgcttgatgatgtccatctca |
232 |
Q |
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|||| |||| |||||||||| |||||||||| ||||||||||| |||||||||| |||||| ||||||| |
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| T |
11156058 |
ctgctctttcgcttttcctggcctcatacttgtttcttgttgtgcaggttgcttgttgatgttcatctca |
11155989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 11144983 - 11144811
Alignment:
| Q |
65 |
gtgttgtaacattcattttattacatattcagtata--aataattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccg |
162 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| | ||| |||||||| |||||| |
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| T |
11144983 |
gtgttgtaacattcattttattacatatttggtatataaataattttattatgcggttgtatatctttcacttcctcgtaaaattattcaagttccgcca |
11144884 |
T |
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| Q |
163 |
ctgcacttttccttttcctggactc---atacttgcttcttgttgtgtaggttgcttgatgatgtccatctca |
232 |
Q |
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|||| |||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
11144883 |
ctgctctttcgcttttcctggactcataatacttgcttcttgtggtgtaggttgcttgctgatgttcatctca |
11144811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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