View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18302_low_40 (Length: 225)

Name: NF18302_low_40
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18302_low_40
NF18302_low_40
[»] chr2 (11 HSPs)
chr2 (1-206)||(10482676-10482881)
chr2 (1-161)||(10538465-10538627)
chr2 (1-157)||(10457194-10457355)
chr2 (44-162)||(10467261-10467379)
chr2 (1-161)||(10500864-10501028)
chr2 (44-127)||(7466896-7466976)
chr2 (44-162)||(10512222-10512340)
chr2 (42-162)||(10444392-10444512)
chr2 (44-87)||(10845331-10845374)
chr2 (61-151)||(28108174-28108264)
chr2 (95-151)||(27963579-27963638)
[»] chr1 (1 HSPs)
chr1 (44-162)||(24051085-24051203)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10482881 - 10482676
Alignment:
Q  1 gctaggtgaaacaaatgcttatgtgacagtatattttttcatgtttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10482881 gctaggtgaaacaaatgcttatgtgacagtatattttttcatgtttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaa 10482782  T
Q  101 ttgatatttctgagttgctctcaagagattctgagcaagtaagtagtttctttatatgacaatactccgatttgtgtttgaaaaaagcaatactctagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10482781 ttgatatttctgagttgctctcaagagattctgagcaagtaagtagtttctttatatgacaatactccgatttgtgtttgaaaaaagcaatactctagtt 10482682  T
Q  201 ctatat 206  Q
    ||||||    
T  10482681 ctatat 10482676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10538627 - 10538465
Alignment:
Q  1 gctaggtgaaacaaatgcttatgtgacagtatattttt----tcatg-tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttc 95  Q
    |||||||| |||||||| | |||||||||| |||||||    ||||  |||||| ||||||| ||||||| || ||||||||| |||||||| |||||||    
T  10538627 gctaggtgcaacaaatgttaatgtgacagtctatttttgtgctcattatttaattaggtgattcttttactgaggggttagtaggatatacaaaggcttc 10538528  T
Q  96 ttcaattgatatttctgagttgctctcaagagattctgagcaagtaagtagtttctttatatgaca 161  Q
    |   |||||| ||||||||||| |||||| ||| |||| |||||||||||||||||||||||||||    
T  10538527 t---attgatgtttctgagttggtctcaacagactctgtgcaagtaagtagtttctttatatgaca 10538465  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10457355 - 10457194
Alignment:
Q  1 gctaggtgaaacaaatgcttatgtgacagtatattttttcatgtt-------taatcaggtgatacttttaccgatgggttagtaagatatacagaggct 93  Q
    ||||||| ||||||||| | |||||||| ||| ||||||||||||       |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  10457355 gctaggtaaaacaaatgttaatgtgacaatatgttttttcatgttcattatttaatcaggtgatacttttactgatgggttagtaagatatacaaaggct 10457256  T
Q  94 tcttcaattgatatttctgagttgctctcaagagattct---gagcaagtaagtagtttctttatat 157  Q
    |||   |||||| ||||| ||||| ||||  ||||||||   | ||||||||||||||||| |||||    
T  10457255 tct---attgatgtttcttagttggtctc--gagattctggagtgcaagtaagtagtttctctatat 10457194  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 10467379 - 10467261
Alignment:
Q  44 tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattct---gagcaagt 140  Q
    |||||| |||||||||||||||||||||||| |||||||||||| ||   |||||  ||||| |||||||| || ||||||||||||||   | ||||||    
T  10467379 tttaattaggtgatacttttaccgatgggttggtaagatatacaaag---tcttctgttgatgtttctgagctgatctcaagagattctggagtgcaagt 10467283  T
Q  141 aagtagtttctttatatgacaa 162  Q
     |||| ||||||||||||||||    
T  10467282 tagtattttctttatatgacaa 10467261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10501028 - 10500864
Alignment:
Q  1 gctaggtgaaacaaatgcttatgtgacagtatattttttcatgtt----taatcaggtgatacttttaccgatgggttagtaagatatacagaggcttct 96  Q
    ||||||||||||||||  ||||||||| || | ||||||| | ||    |||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  10501028 gctaggtgaaacaaatctttatgtgacggtctgttttttcgtcttcaattaatcaggtgatacttttactgatggcttagtaagatatacaaaggcttct 10500929  T
Q  97 tcaattgatatttctgagttgctctcaagagattct---gagcaagtaagtagtttctttatatgaca 161  Q
       | |||| | ||||||||| | ||  ||| ||||   | |||||||||||||||||||||||||||    
T  10500928 ---actgatgtatctgagttggtttctggagtttctggagtgcaagtaagtagtttctttatatgaca 10500864  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 7466896 - 7466976
Alignment:
Q  44 tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagag 127  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||   | |||| ||||||||||| |||||||||    
T  7466896 tttaatcaggtgatactattaccgatgggttggtaagatatacaaaggcttct---actgatgtttctgagttggtctcaagag 7466976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 10512340 - 10512222
Alignment:
Q  44 tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattct---gagcaagt 140  Q
    |||||||||| ||||||||||| ||||| ||||||||||||| | ||||||||    ||||| ||||||||||| | ||||||| ||||   | ||||||    
T  10512340 tttaatcaggcgatacttttactgatggattagtaagatatagaaaggcttct---gttgatgtttctgagttggtttcaagagtttctggagtgcaagt 10512244  T
Q  141 aagtagtttctttatatgacaa 162  Q
    |||||||||||  |||||||||    
T  10512243 aagtagtttctaaatatgacaa 10512222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 10444512 - 10444392
Alignment:
Q  42 tgtttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattct---gagcaa 138  Q
    ||||||||||||||||||||||||| ||||| |||| | ||||||| ||||  ||   |||||| ||||||||| | |||   ||||||||   | ||||    
T  10444512 tgtttaatcaggtgatacttttaccaatgggatagtgacatatacaaaggcacct---attgatgtttctgagtaggtctttggagattcttaagtgcaa 10444416  T
Q  139 gtaagtagtttctttatatgacaa 162  Q
    ||||||||||||||||||||||||    
T  10444415 gtaagtagtttctttatatgacaa 10444392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 10845374 - 10845331
Alignment:
Q  44 tttaatcaggtgatacttttaccgatgggttagtaagatataca 87  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  10845374 tttaatcaggagatacttttactgatgggttagtaagatataca 10845331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 28108174 - 28108264
Alignment:
Q  61 tttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattctga---gcaagtaagtagtttct 151  Q
    ||||| |||||||||||||| ||||||  | |||||   |||||| ||||| ||||| ||||||||||||||||   |||||||||||||||||    
T  28108174 tttactgatgggttagtaagttatacaatgacttct---attgatgtttctaagttggtctcaagagattctgatgtgcaagtaagtagtttct 28108264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 27963638 - 27963579
Alignment:
Q  95 cttcaattgatatttctgagttgctctcaagagattctga---gcaagtaagtagtttct 151  Q
    |||| |||||| ||||||||| | ||||||||||||||||   |||||||||||||||||    
T  27963638 cttccattgatgtttctgagtcggtctcaagagattctgacgtgcaagtaagtagtttct 27963579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 24051085 - 24051203
Alignment:
Q  44 tttaatcaggtgatacttttaccgatgggttagtaagatatacagaggcttcttcaattgatatttctgagttgctctcaagagattct---gagcaagt 140  Q
    |||||||||| ||||||||||| |||||||  || | |  ||| |||||||||   |||||| ||||||||||| ||||||||||||||   | ||||||    
T  24051085 tttaatcaggcgatacttttactgatgggtcggtgataagtaccgaggcttct---attgatgtttctgagttggtctcaagagattctggagtgcaagt 24051181  T
Q  141 aagtagtttctttatatgacaa 162  Q
    | ||||||||||||||||||||    
T  24051182 aggtagtttctttatatgacaa 24051203  T

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