View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_42 (Length: 214)
Name: NF18302_low_42
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_42 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 10482888 - 10483102
Alignment:
| Q |
1 |
tgttcgagaggaatgcccataattttgtacgagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaaaactggag |
100 |
Q |
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| T |
10482888 |
tgttcgagaggaatgcccataaatttgtacgagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaaaactggag |
10482987 |
T |
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| Q |
101 |
tcctaataaaagatgttacaaggcaatttgaaca-ccattgttgaagagacttgcagaaggacttcacatttgtttcatctaatgtgaacagactgtcac |
199 |
Q |
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| T |
10482988 |
tcctaataaaagatgttacaaggcaatttgaacatccattgttgaagagacttgcagaaggacttcacatttgtttcatctaatgtgaacagactgtcac |
10483087 |
T |
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| Q |
200 |
ataagcatttgtttc |
214 |
Q |
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| T |
10483088 |
actaacatttgtttc |
10483102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 10457362 - 10457544
Alignment:
| Q |
1 |
tgttcgagaggaatgcccataattttgtacgagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaaaactggag |
100 |
Q |
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| T |
10457362 |
tgttggagaggaatgcccataaattggtatgagactggatcgtgttttttaatgggatacagaactagagtgttggttttttcacacacaaaaactggag |
10457461 |
T |
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| Q |
101 |
tcctaataaaagatgttacaaggcaatttgaa-caccattgttgaagagacttgcagaaggacttcacatttgtttcatctaa |
182 |
Q |
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| T |
10457462 |
tcccaataaaagatgttacaaggcaatgtgaaggttcattattaaagtgacttgcagaaagacttcacaattgtttcatctaa |
10457544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 10457569 - 10457733
Alignment:
| Q |
1 |
tgttcgagaggaatgcccataattttgtacgagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaaaactggag |
100 |
Q |
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| T |
10457569 |
tgttggagaggattacccataaattcgtatgagactggattgtgttgtttaatgggata--gacctagagtattgcttttttcacacacaaaaactggag |
10457666 |
T |
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| Q |
101 |
tcctaataaaagatgttacaaggcaatttgaaca-ccattgttgaagagacttgcagaaggacttca |
166 |
Q |
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| T |
10457667 |
tccgaataaaggatgttccaaggcaattagaacattcattgctgaagttactcgcagaaagacttca |
10457733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10512396 - 10512520
Alignment:
| Q |
1 |
tgttcgagaggaatgcccataattttgtacgagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaaaactggag |
100 |
Q |
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| T |
10512396 |
tgttcgagtggaatgcccataaattcgtatgagattggattgtgttgtttaatggattatagagctagagtattggttttttcacatacaaaaactggag |
10512495 |
T |
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| Q |
101 |
tcctaataaaagatgttacaaggca |
125 |
Q |
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| T |
10512496 |
tcccaatcaaggatgttacaaggca |
10512520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 10501041 - 10501161
Alignment:
| Q |
7 |
agaggaatgcccataattttgtacgagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaaaactggagtcctaa |
106 |
Q |
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| T |
10501041 |
agaggaatgccactaaatttgtatgagactgaatagtgttgttgaatgggagatagaactagattgttggttttttcacacaaaaaaactggagtcccaa |
10501140 |
T |
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| Q |
107 |
taaaagatgttacaaggcaat |
127 |
Q |
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| T |
10501141 |
taaaggatgttaaaagccaat |
10501161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 10482620 - 10482711
Alignment:
| Q |
1 |
tgttcgagaggaatgcccataattttgtacgagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaa |
92 |
Q |
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| T |
10482620 |
tgttcgagaggaatgctcaaaatttcctaagagataggattatgttgtttaataggatatagaactagagtattgcttttttcaaacacaaa |
10482711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 10483140 - 10483237
Alignment:
| Q |
32 |
agactggattgtgtttttaaatgggatac-----agaactagagtgttggttttttcacacacaaaaactggagtcctaataaaagatgttacaaggcaa |
126 |
Q |
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| T |
10483140 |
agactggattgtgttgtttaatgggatattatatagaactaaactattggttttttcacacacaaa--ctggaattccaataaaggatgttacaaggcaa |
10483237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 24051007 - 24050911
Alignment:
| Q |
31 |
gagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaaaactggagtcctaataaaagatgttacaaggcaat |
127 |
Q |
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| T |
24051007 |
gagattggattgtgttgtttaatgagatatagaactagagtatttgttttttaacacacaaaaactagagtaccaataatggatgttgcaagacaat |
24050911 |
T |
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