View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18302_low_6 (Length: 694)
Name: NF18302_low_6
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Original strand, 52262993 - 52263514
Alignment:
| Q |
17 |
cagaacccactttccgaaatatcgccgtcgccatctccgtcgtcagcgacggcgccagctctggtcctttcaaactcaggaaaacggatcgatcaagcag |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52262993 |
cagaacccactttccgaaatatcaccgtcgccatctccgtcgtcagcgacggcgccagctctggtcctttcaaactcaggaaaacggatcgatcaagcag |
52263092 |
T |
|
| Q |
117 |
ggaagaagaagtacgtaaagcaagtaacgggtcgtcacaacgatactgagcttcatctagcagctcaaagaggtgatgttggtgctgtgagacagatcct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52263093 |
ggaagaagaagtacgtaaagcaagtaacgggtcgtcacaacgatactgagcttcatctagcagctcaaagaggtgatgttggtgctgtgagacagatcct |
52263192 |
T |
|
| Q |
217 |
tcttgatattgattctcaaataatgggtactttgagtggtgatgatgatgttgatcttaacgctgagattgctgaggttcgtgctcttgttgttaatgaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
52263193 |
tcttgatattgattctcaaataatgggtactttgagtggtgatgatgatgttgatcttaacgctgagattgctgaagttcgtgctcttgttgtgaatgaa |
52263292 |
T |
|
| Q |
317 |
gagaatgaacttggtgaaactgctttgtttactgctgctgaaaagggtcatcttgatgttgttaaggagttgttaaaacattcaactcttcaaactgttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52263293 |
gagaatgaacttggtgaaactgctttgtttactgctgctgaaaagggtcatcttgatgttgttaaggagttgttgaaacattcaactcttcaaactgttt |
52263392 |
T |
|
| Q |
417 |
ctaaaaagaatcgatctggttttgatcctttgcatattgctgctagtcaaggacatcatggtatgacttgtattcaatgtcttgtcgcttttgttttact |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52263393 |
ctaaaaagaatcgatctggttttgatcctttgcatattgctgctagtcaaggacatcatggtatgacttgtattcaatgtcttgtcgcttttgttttact |
52263492 |
T |
|
| Q |
517 |
ttatgttagctaggatgctctg |
538 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
52263493 |
ttatgttagctaggatgttctg |
52263514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 604 - 679
Target Start/End: Original strand, 52263580 - 52263655
Alignment:
| Q |
604 |
taaaaatgggtagtctttatgtatgtttggttttgcagtgagaaaaatttatgtttggatacattaatgtaaaact |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52263580 |
taaaaatgggtagtctttatgtatgtttggttttgcagtgagaaaaatttatgtttggatacattaatgtaaaact |
52263655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University