View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18302_low_7 (Length: 632)

Name: NF18302_low_7
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18302_low_7
NF18302_low_7
[»] chr5 (7 HSPs)
chr5 (9-451)||(28203506-28203950)
chr5 (471-602)||(16104941-16105072)
chr5 (471-602)||(11583326-11583457)
chr5 (538-602)||(109680-109745)
chr5 (546-602)||(20313987-20314043)
chr5 (555-602)||(33150147-33150194)
chr5 (471-504)||(109777-109810)
[»] chr3 (11 HSPs)
chr3 (471-602)||(7853259-7853390)
chr3 (471-602)||(33341289-33341421)
chr3 (468-602)||(54652392-54652526)
chr3 (474-602)||(47785565-47785693)
chr3 (538-602)||(19946040-19946105)
chr3 (506-588)||(37917222-37917304)
chr3 (502-588)||(15549739-15549825)
chr3 (507-588)||(25104839-25104920)
chr3 (555-588)||(4813228-4813261)
chr3 (471-504)||(19945975-19946008)
chr3 (468-504)||(9591529-9591565)
[»] scaffold0150 (2 HSPs)
scaffold0150 (471-602)||(21056-21187)
scaffold0150 (471-602)||(27885-28016)
[»] chr4 (5 HSPs)
chr4 (471-602)||(16522127-16522258)
chr4 (471-602)||(7186586-7186717)
chr4 (496-594)||(17376297-17376395)
chr4 (538-602)||(9295039-9295103)
chr4 (546-588)||(12134497-12134539)
[»] chr6 (5 HSPs)
chr6 (471-602)||(18824234-18824365)
chr6 (471-602)||(18840089-18840220)
chr6 (471-602)||(17084073-17084204)
chr6 (471-602)||(18582633-18582764)
chr6 (471-602)||(4990351-4990481)
[»] chr2 (5 HSPs)
chr2 (471-602)||(25212323-25212454)
chr2 (479-602)||(24827619-24827742)
chr2 (520-588)||(20272703-20272771)
chr2 (546-602)||(19434151-19434207)
chr2 (546-602)||(43642253-43642309)
[»] scaffold0120 (2 HSPs)
scaffold0120 (471-602)||(18676-18808)
scaffold0120 (471-602)||(30461-30593)
[»] chr7 (6 HSPs)
chr7 (471-602)||(7284895-7285026)
chr7 (555-602)||(14275533-14275580)
chr7 (555-588)||(15978693-15978726)
chr7 (539-594)||(3192925-3192980)
chr7 (496-583)||(44305973-44306060)
chr7 (496-584)||(28719783-28719871)
[»] scaffold0310 (1 HSPs)
scaffold0310 (471-602)||(954-1085)
[»] scaffold0028 (2 HSPs)
scaffold0028 (538-602)||(129900-129964)
scaffold0028 (471-504)||(129835-129868)
[»] scaffold0317 (1 HSPs)
scaffold0317 (496-588)||(13414-13506)
[»] scaffold0183 (1 HSPs)
scaffold0183 (546-602)||(10350-10406)
[»] scaffold0833 (1 HSPs)
scaffold0833 (538-599)||(2642-2703)
[»] scaffold0231 (1 HSPs)
scaffold0231 (546-599)||(13543-13596)
[»] scaffold0013 (1 HSPs)
scaffold0013 (507-588)||(7984-8065)
[»] scaffold0468 (1 HSPs)
scaffold0468 (496-588)||(11855-11947)
[»] chr8 (4 HSPs)
chr8 (555-602)||(24107195-24107243)
chr8 (496-583)||(20176734-20176821)
chr8 (496-583)||(20221461-20221548)
chr8 (555-602)||(34012805-34012852)
[»] scaffold0090 (1 HSPs)
scaffold0090 (539-602)||(3950-4013)
[»] scaffold0158 (1 HSPs)
scaffold0158 (538-602)||(24479-24543)
[»] scaffold0017 (1 HSPs)
scaffold0017 (546-602)||(12115-12171)
[»] scaffold0032 (1 HSPs)
scaffold0032 (555-588)||(117043-117076)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 28203506 - 28203950
Alignment:
Q  9 aatattacttattttatctgtcttattatatgcctagtttaagattacacactacttttaaaaaataccctatgataaccgacattttaatttgcaaagg 108  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28203506 aatattacttattttatctgtcttattataagcctagtttaagattacacactacttttaaaaaataccctatgataaccgacattttaatttgcaaagg 28203605  T
Q  109 nnnnnnng---ttaaaaatacgtttagcaaaataattattttgagtgtaaatcatgacannnnnnnnnnnnnnnnnnaaaatgattaaactacctttcga 205  Q
               | ||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
T  28203606 aagaaaaaaaatgaaaaatacgtttagcaaaataattattttgagtgtaaatcatgacattttattttattttttt-aaaatgattaaactacctttcga 28203704  T
Q  206 acgatttaaaaaattgaggcgggggtaattagagtgattgaaattattgttttttcatgcttttgtttgggtaattcgaataaggatgnnnnnnnnnaaa 305  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          ||    
T  28203705 acgatttaaaaaattgagg-gagggtaattagagtgattgaaattagtgttttttcatgcttttgtttgggtaattcgaataaggatgttttttttagaa 28203803  T
Q  306 gatcgaatcaggatgttgaaactgcgtcctggattattctggcacacgtaattcaaattgccctgatgatttggaagaatca-ccaaaaaggaaatttaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28203804 gatcgaatcaggatgttgaaactgcgtcctggattattctgtcacacgtaattcaaattgccctgatgatttggaagaatcacccaaaaaggaaatttaa 28203903  T
Q  405 ggctaagtgttgagagttttggggtgaaattctatggttgataatgt 451  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  28203904 ggctaagtgttaagagttttggggtgaaattctatggttgataatgt 28203950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 16104941 - 16105072
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  16104941 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 16105040  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||||||||||| |||||||| ||||    
T  16105041 aaaacaaaaccaagttagaatcaagctttgat 16105072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 11583326 - 11583457
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| || |||||||||||| || ||||||||||||||||  ||||||| |||||||  |||||||||  |||||    
T  11583326 tatttagttcacaaaagttcatttcgacaaaaacatcaaaattaccaagttacgacaagttcatatcatttcttccatattgcaaaaccaattccttttc 11583425  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||| ||||||| |||||||||||||    
T  11583426 aaaacaaaacaaagttagaatcaagctatgat 11583457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 602
Target Start/End: Complemental strand, 109745 - 109680
Alignment:
Q  538 atttctttcatattgtcaaaccaatttattttcaaaacaaaa-ccaagttaggatcaagctatgat 602  Q
    ||||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  109745 atttcttccatattgcaaaaccaattcattttcaaaacaaaaaccaagttaggatcaagctatgat 109680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 20313987 - 20314043
Alignment:
Q  546 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||  |||| |||| |||||||||||||||||||||||| |||||||||||||    
T  20313987 catattgcaaaactaattcattttcaaaacaaaaccaagttagaatcaagctatgat 20314043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Complemental strand, 33150194 - 33150147
Alignment:
Q  555 aaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||| | |||||||||||||||||||||||| |||||| ||||||    
T  33150194 aaaccaactcattttcaaaacaaaaccaagttagaatcaagttatgat 33150147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 504
Target Start/End: Complemental strand, 109810 - 109777
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatc 504  Q
    ||||||||||||||||||||||||||||| ||||    
T  109810 tatttagttcacaaaagttcattttgacaaaatc 109777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 7853259 - 7853390
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  ||||||||||||||||    
T  7853259 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaaccaatttattttc 7853358  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||| |||||||||||||||||||||    
T  7853359 aaaacaaaactaagttaggatcaagctatgat 7853390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 33341289 - 33341421
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataa-tcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttatttt 569  Q
    ||||||||||||||||||||||||||||| || ||||||||||||  |||||||||||||||||||  ||||||| |||||||  ||||||| | |||||    
T  33341289 tatttagttcacaaaagttcattttgacaaaaatcatcaaaattatcaaattacgacaagttcatatcatttcttccatattgcgaaaccaaatcatttt 33341388  T
Q  570 caaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||||||||||||||| |||||||||||||    
T  33341389 caaaacaaaaccaagttagaatcaagctatgat 33341421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 468 - 602
Target Start/End: Complemental strand, 54652526 - 54652392
Alignment:
Q  468 tcttatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttatt 567  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||| || |||||||||| |||||  |||| || |||||||  ||| ||||| |||    
T  54652526 tcttatttagttcacaaaagttcgtttcgacaaaatcatcaaaattaccaagttacgacaagatcatatcatttgttccatattgcgaaatcaattcatt 54652427  T
Q  568 ttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||||||||| |||||||||||||||||||||    
T  54652426 ttcaaaacaaaacaaagttaggatcaagctatgat 54652392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 474 - 602
Target Start/End: Complemental strand, 47785693 - 47785565
Alignment:
Q  474 ttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaa 573  Q
    ||||||||||||| ||||||| |||| ||||||||||||||| || ||||| ||||||||||  |||| || |||||||  ||| ||||| |||||||||    
T  47785693 ttagttcacaaaatttcatttcgacaaaatcatcaaaattaccaagttacggcaagttcatatcatttattccatattgcaaaatcaattcattttcaaa 47785594  T
Q  574 acaaaaccaagttaggatcaagctatgat 602  Q
    ||||||| |||||||||||||||||||||    
T  47785593 acaaaacaaagttaggatcaagctatgat 47785565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 602
Target Start/End: Original strand, 19946040 - 19946105
Alignment:
Q  538 atttctttcatattgtcaaaccaatttattttcaaaacaaaa-ccaagttaggatcaagctatgat 602  Q
    ||||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  19946040 atttcttccatattgcaaaaccaattcattttcaaaacaaaaaccaagttaggatcaagctatgat 19946105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 588
Target Start/End: Complemental strand, 37917304 - 37917222
Alignment:
Q  506 tcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 588  Q
    ||||||| || || ||||||||||||| ||  ||||||| |||||||  ||||||||| || |||||||||||||||||||||    
T  37917304 tcaaaatcacaaagttacgacaagttcgtatcatttcttccatattgcaaaaccaattcatgttcaaaacaaaaccaagttag 37917222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 588
Target Start/End: Original strand, 15549739 - 15549825
Alignment:
Q  502 atcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 588  Q
    |||||||||||  | || ||||||||||||| ||   |||||| ||||||   ||||||||| ||||||||||||||||||||||||    
T  15549739 atcatcaaaatctccaagttacgacaagttcgtatcgtttcttccatattacaaaaccaattcattttcaaaacaaaaccaagttag 15549825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 588
Target Start/End: Complemental strand, 25104920 - 25104839
Alignment:
Q  507 caaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 588  Q
    |||||| || || ||||||||||||| ||  ||| ||| |||||||  ||||||||| |||||| |||||||||||||||||    
T  25104920 caaaatcacaaagttacgacaagttcgtatcattccttccatattgcaaaaccaattcattttccaaacaaaaccaagttag 25104839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 588
Target Start/End: Original strand, 4813228 - 4813261
Alignment:
Q  555 aaaccaatttattttcaaaacaaaaccaagttag 588  Q
    ||||||||| ||||||||||||||||||||||||    
T  4813228 aaaccaattcattttcaaaacaaaaccaagttag 4813261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 504
Target Start/End: Original strand, 19945975 - 19946008
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatc 504  Q
    ||||||||||||||||||||||||||||| ||||    
T  19945975 tatttagttcacaaaagttcattttgacaaaatc 19946008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 504
Target Start/End: Complemental strand, 9591565 - 9591529
Alignment:
Q  468 tcttatttagttcacaaaagttcattttgacataatc 504  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  9591565 tcttagttagttcacaaaagttcattttgacaaaatc 9591529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 21056 - 21187
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| |||||| |||||||| || ||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  21056 tatttagttcacaaaagttcatttcgacaaaatcataaaaattaccaagttacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 21155  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||||||||||||||||||||||||||||    
T  21156 aaaacaaaaccaagttaggatcaagctatgat 21187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 27885 - 28016
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| |||||| |||||||| || ||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  27885 tatttagttcacaaaagttcatttcgacaaaatcataaaaattaccaagttacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 27984  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||||||||||||||||||||||||||||    
T  27985 aaaacaaaaccaagttaggatcaagctatgat 28016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 16522127 - 16522258
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  16522127 tatttagttcacaaaagttcatttggacaaaatcatcaaaattaccaaattacggcaagttcatatcatttcttccatattgcaaaaccaattcattttc 16522226  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||||||||||| |||||||||||||    
T  16522227 aaaacaaaaccaagttagaatcaagctatgat 16522258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 471 - 602
Target Start/End: Complemental strand, 7186717 - 7186586
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    ||||||||| |||||||||||||| |||| ||||| ||||||||| || ||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  7186717 tatttagtttacaaaagttcatttcgacaaaatcaacaaaattaccaagttacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 7186618  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||||| |||||||| ||||||||||    
T  7186617 aaaacaaaaccatgttaggataaagctatgat 7186586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 496 - 594
Target Start/End: Complemental strand, 17376395 - 17376297
Alignment:
Q  496 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaa 594  Q
    |||| |||||||||||| || || ||||||||||||| ||  ||||||| |||||||  ||||||||| ||||||||||||||| |||||||| |||||    
T  17376395 gacaaaatcatcaaaatcacaaagttacgacaagttcgtatcatttcttccatattgcaaaaccaattcattttcaaaacaaaatcaagttagaatcaa 17376297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 538 - 602
Target Start/End: Original strand, 9295039 - 9295103
Alignment:
Q  538 atttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||| ||| |||  ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  9295039 atttcttccatgttgcaaaaccaattcattttcaaaacaaaaccaagttagaatcaagctatgat 9295103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 12134539 - 12134497
Alignment:
Q  546 catattgtcaaaccaatttattttcaaaacaaaaccaagttag 588  Q
    |||||||  ||||||||| ||||||||||||||||||||||||    
T  12134539 catattgcaaaaccaattcattttcaaaacaaaaccaagttag 12134497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 471 - 602
Target Start/End: Complemental strand, 18824365 - 18824234
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  |||| |||| ||| ||    
T  18824365 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaacgaattcattatc 18824266  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||||||||||| |||||||||||||    
T  18824265 aaaacaaaaccaagttagaatcaagctatgat 18824234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 471 - 602
Target Start/End: Complemental strand, 18840220 - 18840089
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  |||| |||| ||| ||    
T  18840220 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaacgaattcattatc 18840121  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||||||||||| |||||||||||||    
T  18840120 aaaacaaaaccaagttagaatcaagctatgat 18840089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 471 - 602
Target Start/End: Complemental strand, 17084204 - 17084073
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||| ||||||||||||||||| |||| ||| |||||||||||  | ||| ||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  17084204 tatttaattcacaaaagttcatttcgacaaaattatcaaaattaccgagttatgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 17084105  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||||||||||| |||||||||||||    
T  17084104 aaaacaaaaccaagttagaatcaagctatgat 17084073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 18582633 - 18582764
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||  ||||||| |||||||  ||| ||||| ||||||    
T  18582633 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaagttacgacaagttcatatcatttcttccatattgcgaaatcaattcattttc 18582732  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||||||||||| |  |||||| ||||||    
T  18582733 aaaacaaaaccaagtgaaaatcaagttatgat 18582764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 4990351 - 4990481
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttc-atactatttctttcatattgtcaaaccaatttatttt 569  Q
    ||||||||||||||||||||||||||||| ||||   | | || ||||| | |  ||||||| |||  ||||||| ||||||   ||||||||| |||||    
T  4990351 tatttagttcacaaaagttcattttgacaaaatccg-acatttcctaaaattc--caagttccatatcatttcttccatatttcaaaaccaattcatttt 4990447  T
Q  570 caaaacaaaa-ccaagttaggatcaagctatgat 602  Q
    |||||||||| |||||||||||||||||||||||    
T  4990448 caaaacaaaaaccaagttaggatcaagctatgat 4990481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 25212323 - 25212454
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    ||||| |||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  25212323 tatttggttcacaaaagttcgtttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 25212422  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||| |||||||||||||||||||||    
T  25212423 aaaacaaaactaagttaggatcaagctatgat 25212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 479 - 602
Target Start/End: Complemental strand, 24827742 - 24827619
Alignment:
Q  479 tcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaa 578  Q
    |||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||  ||||||| |||||||  ||||||||| ||||||||||||||    
T  24827742 tcacaaaagttcatttcgacaaaatcatcaaaattaccgaattacgacaagttcatatcatttcttccatattgcaaaaccaattcattttcaaaacaaa 24827643  T
Q  579 accaagttaggatcaagctatgat 602  Q
    |||||||||| |||||||||||||    
T  24827642 accaagttagaatcaagctatgat 24827619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 520 - 588
Target Start/End: Original strand, 20272703 - 20272771
Alignment:
Q  520 ttacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 588  Q
    ||||||||||||| ||  ||| ||| |||||||  ||||||||| ||||||||||||||||||||||||    
T  20272703 ttacgacaagttcgtagcattccttccatattgcaaaaccaattcattttcaaaacaaaaccaagttag 20272771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 19434207 - 19434151
Alignment:
Q  546 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||  ||||||| | |||||||||||||||||| ||||| |||||||||||||    
T  19434207 catattgcaaaaccaaatcattttcaaaacaaaaccatgttagaatcaagctatgat 19434151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 43642253 - 43642309
Alignment:
Q  546 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||  |||||||||  ||||||||||||||||| ||||| ||||| |||||||    
T  43642253 catattgcaaaaccaattcgttttcaaaacaaaaccacgttagaatcaaactatgat 43642309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 18676 - 18808
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttat-ttt 569  Q
    |||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||  ||||||| ||||||   |||||||||  | |||    
T  18676 tatttagttcacaaaagttcatttcgacaaaatcatcacaattaccaaattacgacaagttcatatcatttcttccatattacaaaaccaattcctattt 18775  T
Q  570 caaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||||||||||||||||||||||||||    
T  18776 caaaacaaaaccaagttaggatcaagctatgat 18808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 471 - 602
Target Start/End: Original strand, 30461 - 30593
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttat-ttt 569  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||| ||| ||||||   |||||||||  | |||    
T  30461 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcattacttccatattacaaaaccaattcctattt 30560  T
Q  570 caaaacaaaaccaagttaggatcaagctatgat 602  Q
    | |||||||||||||||||||||||||||||||    
T  30561 ctaaacaaaaccaagttaggatcaagctatgat 30593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 471 - 602
Target Start/End: Complemental strand, 7285026 - 7284895
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    |||||||||||||||| ||||||| |||| |||| |||||||||| || ||||||||||||||||  ||||||| | ||||| |||||| ||| ||||||    
T  7285026 tatttagttcacaaaatttcatttcgacaaaatcgtcaaaattaccaagttacgacaagttcatatcatttcttccgtattgccaaaccgattcattttc 7284927  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||||||||||||| ||||| |||||||    
T  7284926 aaaacaaaaccaagttagaatcaatctatgat 7284895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 602
Target Start/End: Complemental strand, 14275580 - 14275533
Alignment:
Q  555 aaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  14275580 aaaccaattcattttcaaaacaaaaccacgttagaatcaagctatgat 14275533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 555 - 588
Target Start/End: Complemental strand, 15978726 - 15978693
Alignment:
Q  555 aaaccaatttattttcaaaacaaaaccaagttag 588  Q
    ||||||||||||||||||||||||||||||||||    
T  15978726 aaaccaatttattttcaaaacaaaaccaagttag 15978693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 594
Target Start/End: Complemental strand, 3192980 - 3192925
Alignment:
Q  539 tttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaa 594  Q
    |||||| |||||||  ||| ||||| |||||||||||||||||||||||| |||||    
T  3192980 tttcttccatattgcaaaatcaattcattttcaaaacaaaaccaagttagaatcaa 3192925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 583
Target Start/End: Complemental strand, 44306060 - 44305973
Alignment:
Q  496 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaa 583  Q
    |||| |||||||||||| |  ||| ||| |||||||| || ||||| || |||| ||  ||||||||| |||||||||||||||||||    
T  44306060 gacaaaatcatcaaaatcataaaactacaacaagttcgtattatttattccataatgcaaaaccaattcattttcaaaacaaaaccaa 44305973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 584
Target Start/End: Original strand, 28719783 - 28719871
Alignment:
Q  496 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaag 584  Q
    |||| |||||||||||| |  ||  |||||||||||| ||  | ||| | |||||||  ||||||||| ||||||||||||||||||||    
T  28719783 gacaaaatcatcaaaatcataaagctacgacaagttcgtatcacttcctccatattgcaaaaccaattcattttcaaaacaaaaccaag 28719871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 471 - 602
Target Start/End: Complemental strand, 1085 - 954
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 570  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||||||||||||  ||||||| |||||||  ||| ||| | |||| |    
T  1085 tatttagtttacaaaagttcatttcgacaaaatcatcaaaattaccaagttacgacaagttcatatcatttcttccatattgcgaaatcaaatcatttcc 986  T
Q  571 aaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||| |||||||||||||| |||||||||||||    
T  985 aaatcaaaaccaagttagaatcaagctatgat 954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 538 - 602
Target Start/End: Original strand, 129900 - 129964
Alignment:
Q  538 atttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  129900 atttcttccatattgcaaaatcaattcattttcaaaacaaaaccaagttaggatcaagctatgat 129964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 504
Target Start/End: Original strand, 129835 - 129868
Alignment:
Q  471 tatttagttcacaaaagttcattttgacataatc 504  Q
    ||||||||||||||||||||||||||||| ||||    
T  129835 tatttagttcacaaaagttcattttgacaaaatc 129868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 13506 - 13414
Alignment:
Q  496 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 588  Q
    |||| |||||||||||| || || ||||||||| ||| ||  ||||||| |||||||  ||||||||| |||||||||||||||| |||||||    
T  13506 gacaaaatcatcaaaatcacaaagttacgacaatttcgtatcatttcttccatattgcaaaaccaattcattttcaaaacaaaacaaagttag 13414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 10350 - 10406
Alignment:
Q  546 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||  ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10350 catattgcaaaaccaattcattttcaaaacaaaaccaagttagaatcaagctatgat 10406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0833 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 2642 - 2703
Alignment:
Q  538 atttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctat 599  Q
    ||||||| |||||||  ||||||||| ||||| |||||||||||||||||||||||| ||||    
T  2642 atttcttccatattgcaaaaccaattcatttttaaaacaaaaccaagttaggatcaacctat 2703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 13596 - 13543
Alignment:
Q  546 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctat 599  Q
    |||||||  ||||||||| |||||||||||||||||||||||| ||||||||||    
T  13596 catattgcaaaaccaattcattttcaaaacaaaaccaagttagaatcaagctat 13543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 588
Target Start/End: Complemental strand, 8065 - 7984
Alignment:
Q  507 caaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 588  Q
    |||||| || |||||||||||||||| ||  ||| ||| |||||||  ||||||||| |||||| |||||||||||||||||    
T  8065 caaaatcacaaaattacgacaagttcgtatcattccttccatattgcaaaaccaattcattttccaaacaaaaccaagttag 7984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 11947 - 11855
Alignment:
Q  496 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 588  Q
    |||| |||||||||||| || || ||| ||||||||| ||  ||||||| |||| ||  ||||||||| ||||||||||||||| ||||||||    
T  11947 gacaaaatcatcaaaatcacaaagttatgacaagttcgtatcatttcttccatagtgcaaaaccaattcattttcaaaacaaaaacaagttag 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Complemental strand, 24107243 - 24107195
Alignment:
Q  555 aaaccaatttattttcaaaacaaaa-ccaagttaggatcaagctatgat 602  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24107243 aaaccaattcattttcaaaacaaaaaccaagttaggatcaagctatgat 24107195  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 583
Target Start/End: Complemental strand, 20176821 - 20176734
Alignment:
Q  496 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaa 583  Q
    |||| |||||||||||| |  ||| ||| |||||||| || ||||| || |||| ||  ||||||||| |||||||||||||||||||    
T  20176821 gacaaaatcatcaaaatcataaaactacaacaagttcgtattatttattccataatgcaaaaccaattcattttcaaaacaaaaccaa 20176734  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 583
Target Start/End: Complemental strand, 20221548 - 20221461
Alignment:
Q  496 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaa 583  Q
    |||| |||||||||||| |  ||| ||| |||||||| || ||||| || |||| ||  ||||||||| |||||||||||||||||||    
T  20221548 gacaaaatcatcaaaatcataaaactacaacaagttcgtattatttattccataatgcaaaaccaattcattttcaaaacaaaaccaa 20221461  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Complemental strand, 34012852 - 34012805
Alignment:
Q  555 aaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||| | |||||||||||||||||||||||| |||||| ||||||    
T  34012852 aaaccaactcattttcaaaacaaaaccaagttagaatcaagttatgat 34012805  T

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Target: scaffold0090 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 602
Target Start/End: Complemental strand, 4013 - 3950
Alignment:
Q  539 tttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||| ||||||||  ||||||||| |||||||||||||||| | ||||| |||||||||||||    
T  4013 tttctctcatattgcaaaaccaattcattttcaaaacaaaactacgttagaatcaagctatgat 3950  T

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Target: scaffold0158 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 602
Target Start/End: Original strand, 24479 - 24543
Alignment:
Q  538 atttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    ||||||| |||||||  ||||||||| ||||| |||| ||||| ||||||| |||||||||||||    
T  24479 atttcttccatattgcaaaaccaattcattttaaaaaaaaaacaaagttagaatcaagctatgat 24543  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 602
Target Start/End: Original strand, 12115 - 12171
Alignment:
Q  546 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 602  Q
    |||||||  |||||| || |||||||||||||||||||||||| |||||| ||||||    
T  12115 catattgcaaaaccagttcattttcaaaacaaaaccaagttagaatcaagttatgat 12171  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 588
Target Start/End: Complemental strand, 117076 - 117043
Alignment:
Q  555 aaaccaatttattttcaaaacaaaaccaagttag 588  Q
    ||||||||| ||||||||||||||||||||||||    
T  117076 aaaccaattcattttcaaaacaaaaccaagttag 117043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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