View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18302_low_8 (Length: 592)
Name: NF18302_low_8
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 160 - 494
Target Start/End: Complemental strand, 21624113 - 21623778
Alignment:
| Q |
160 |
gcattaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21624113 |
gcattaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
21624014 |
T |
|
| Q |
260 |
ttctttcatctcactttcttcctccatctctttatttcagatcaattccaa-ccttcacaatttgtatgcacaacacctatatatagagaaatgtagaag |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21624013 |
ttctttcatctcactttcttcctccatctctttatttcagatcaattccaaaccttcacaatttgtatgcacaacacctatatatagagaaatgtagaag |
21623914 |
T |
|
| Q |
359 |
catgattacatgatgagcaataacgatgatgactccttacaaattgtacacgagggaagaattgatacacataattcataacacagacgtgtgtgtttgt |
458 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21623913 |
catgattacatgatgagcaatagcgatgatgactccttacaaattgtacacgagggaagaattgatacacataattcataacacagacgtgtgtgtttgt |
21623814 |
T |
|
| Q |
459 |
tttctactttaattaatatggtcccctgattgtacc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21623813 |
tttctactttaattaatatggtcccctgattgtacc |
21623778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 21624251 - 21624142
Alignment:
| Q |
8 |
agatgaaatacaatttaaacatgcatgcgattttaattgagagacatcattatattacaaacagattttgtagggttgagttttaccccgtctaaatttt |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21624251 |
agatgaaatacaatttaaacatgcgtgcgattttaattgagagacatcattatattacaaacagattttgtagggttgagttttacccggtctaaatttt |
21624152 |
T |
|
| Q |
108 |
aagaaagaaa |
117 |
Q |
| |
|
|||||||||| |
|
|
| T |
21624151 |
aagaaagaaa |
21624142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 531 - 578
Target Start/End: Complemental strand, 21623741 - 21623694
Alignment:
| Q |
531 |
cccgtggtcctatgtaaagatgattgtgtggtttggtctcaccaaatt |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21623741 |
cccgtggtcctatgtaaagatgattgtgtggtttggtctcaccaaatt |
21623694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 40466130 - 40466228
Alignment:
| Q |
162 |
attaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttgat |
260 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
40466130 |
attaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgat |
40466228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 28271927 - 28272022
Alignment:
| Q |
164 |
taccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
259 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||| ||| ||||| || || ||||||||||| |||||||| ||||||| |||||| |||||||| |
|
|
| T |
28271927 |
taccaattcatttccaagttcaatggcagcatcttgataactacttttcttgccaggactacttccacaaaagacacaaaccctcttgaactttga |
28272022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University