View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18302_low_9 (Length: 567)
Name: NF18302_low_9
Description: NF18302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18302_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 205 - 554
Target Start/End: Original strand, 35288274 - 35288623
Alignment:
| Q |
205 |
gttttgtagggtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaaga |
304 |
Q |
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| T |
35288274 |
gttttgtagggtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaaga |
35288373 |
T |
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| Q |
305 |
ttggaagattaaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttca |
404 |
Q |
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| T |
35288374 |
ttggaagattaaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttca |
35288473 |
T |
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| Q |
405 |
taaccacataattctcatgttatatagttagttagtgaaccttgtttcatctcattcattgatagagttttttgctctttgttgttatttgtcattttag |
504 |
Q |
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| T |
35288474 |
taaccacataattctcatgttatatagttagttagtgaaccttgtttcatctcattcattgatagagtcttttgctctttgttgttatttgtcattttag |
35288573 |
T |
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| Q |
505 |
gtgaatatgctacgagagaggaacacgagttatggcaccatcaagtttgt |
554 |
Q |
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| T |
35288574 |
gtgaatatgctacgagagaggaacacgagttatggcaccatcaagtttgt |
35288623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 35287817 - 35287996
Alignment:
| Q |
11 |
catcatcaccactcttttcacctccatttaacaatcctaaattccagctccatcgtcttccacacgccaatgcttttccaccacttcctattcgcaaacc |
110 |
Q |
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| T |
35287817 |
catcatcaccactcttttcacctccatttaacaatcctaaattccagctccatcgtcttccacacgccaatgcttttccaccacttcctattcgcaaacc |
35287916 |
T |
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| Q |
111 |
tggtatcccttaatcgaatatcaattgttgtttttgtaattactattaagtttaaatataattttagtcatgcaattataacg |
193 |
Q |
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| T |
35287917 |
tggtatcccttaatcgaatatcaa---ttgtttttgtaattattattaagtttaaatataattttagtcatgcaattataacg |
35287996 |
T |
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