View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18303_high_1 (Length: 572)
Name: NF18303_high_1
Description: NF18303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18303_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 7 - 557
Target Start/End: Complemental strand, 46667302 - 46666743
Alignment:
| Q |
7 |
gcagagaggagtgtagttgcaatcctgtacgatatttttgcattgtgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667302 |
gcagagaggagtgtagttgcaatcctgtacgatatttttgcattgtgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatat |
46667203 |
T |
|
| Q |
107 |
taacgtaagctcaaatggagaaatattttcagttgagaaaagaagggaaaatgtttctttaattttgaagactataaatgaagtgtataatcttgattgg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667202 |
taacgtaagctcaaatggagaaatattttcagttgagaaaagaagggaaaatgtttctttaattttgaagactataaatgaagtgtataatcttgattgg |
46667103 |
T |
|
| Q |
207 |
tttactagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggtaggtagagtatcctaacacctcaatttacgaatgt |
306 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667102 |
ttcactagtgcttccaagaatgagtgctctgctgctattggctacaagtggatgcttaatcaggtaggtagagtatcctaacacctcaatttacgaatgt |
46667003 |
T |
|
| Q |
307 |
atcgtagaag---------aagggtgtgtttattttttaagtagtatttgattttattgaattgagttgtgctatcaccaaacatatggttaattgaatt |
397 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46667002 |
atcgtagaagttcttaagtaagggtgtgtttattttttaagtagtatttgattttattgaattgagttgtgctattaccaaacatatggttaattgaatt |
46666903 |
T |
|
| Q |
398 |
gcatcacttaacgataaaatttatctaactattgtcatatttttcaataaattaagggtttgatggatcatcataaagaaatagttgaatatttggagca |
497 |
Q |
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|||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666902 |
gcatcattttacgataaaatttctctaactattgtcatatttttcaataaattaagggtttgatggatcatcataaagaaatagttgaatatttggagca |
46666803 |
T |
|
| Q |
498 |
aaaacgagtttctacaatattcttgttcagaagaaatttactccgtagaatggtatctgt |
557 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666802 |
aaaacaagtttctacaatattcttgttcagaagaaatttactccgtagaatggtatctgt |
46666743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 44195520 - 44195436
Alignment:
| Q |
52 |
tgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttc |
136 |
Q |
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|||| ||||| |||| ||||||||| ||| ||| || ||||| ||||||||| |||| ||||||||||||||||||| ||||| |
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| T |
44195520 |
tgtcgatgcagagatttgggagtggatggcatgagacgtttttaaatagtcatcctaacataagctcaaatggagaaatcttttc |
44195436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 54 - 271
Target Start/End: Original strand, 6116961 - 6117178
Alignment:
| Q |
54 |
tcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttcagttgagaaaagaaggg |
153 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| || ||||| || |||||||| || |||||||||| |
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| T |
6116961 |
tcaatgcaaagatctgggagtgggtggtttgagacacttttgaatagtcacattaatataagttccaatggggagatattttctgtacccaaaagaaggg |
6117060 |
T |
|
| Q |
154 |
aaaatgtttctttaattttgaagactataaatgaagtgtataatcttgattggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaa |
253 |
Q |
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||||| |||| | |||||||||||| | || | ||||| |||||||||||||||||||||||||| |||||||||||| | ||| | || ||||| |
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| T |
6117061 |
aaaatatttcatcaattttgaagacacttgataaggtgtacaatcttgattggtttactagtgcttctaagaatgagtgcaactcagctgtgggtttcaa |
6117160 |
T |
|
| Q |
254 |
gtggatgcttaatcaggt |
271 |
Q |
| |
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|||||||||||||||||| |
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| T |
6117161 |
gtggatgcttaatcaggt |
6117178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 63 - 272
Target Start/End: Original strand, 6521792 - 6522001
Alignment:
| Q |
63 |
agatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttcagttgaga-aaagaagggaaaatgtt |
161 |
Q |
| |
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|||||||| ||||| |||||||| || ||||||||||||| ||||| |||||||| || || || |||||||| ||| ||| |||||||| |||||| | |
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| T |
6521792 |
agatctggcagtgggtggtttgagacccttttgaatagtcacattaatgtaagctcgaacggcgagatattttctgtt-agagaaagaaggcaaaatgct |
6521890 |
T |
|
| Q |
162 |
tctttaattttgaagactataaatgaagtgtataatcttgattggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgc |
261 |
Q |
| |
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|||| ||||||| ||||| || || ||| || ||| | || ||| | | ||||||||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
6521891 |
tcttcaattttgcagactttagatagagtatacaatttggactggctcagtagtgcttccaagaatgagtgttctgccgcaattggcttcaagtggatgc |
6521990 |
T |
|
| Q |
262 |
ttaatcaggta |
272 |
Q |
| |
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||||||||||| |
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| T |
6521991 |
ttaatcaggta |
6522001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 33930286 - 33930366
Alignment:
| Q |
192 |
tataatcttgattggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggta |
272 |
Q |
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|||||||| || ||||||| ||||||||| || ||||||||| | |||||| ||||||| ||||||||||||||||||||| |
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| T |
33930286 |
tataatctagactggtttaatagtgcttctaaaaatgagtgcacggctgctgttggcttgaagtggatgcttaatcaggta |
33930366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 33930146 - 33930230
Alignment:
| Q |
52 |
tgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttc |
136 |
Q |
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|||| ||||| |||||||||||||| |||||||| || ||||| ||||||||| |||| ||||||||||||| ||||| ||||| |
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| T |
33930146 |
tgtcgatgcagagatctgggagtggatggtttgagacgtttttaaatagtcatcctaacataagctcaaatggggaaatcttttc |
33930230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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