View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18303_high_10 (Length: 214)

Name: NF18303_high_10
Description: NF18303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18303_high_10
NF18303_high_10
[»] chr1 (3 HSPs)
chr1 (14-197)||(19769250-19769433)
chr1 (134-190)||(45117958-45118014)
chr1 (54-110)||(45117854-45117910)
[»] scaffold0361 (1 HSPs)
scaffold0361 (36-130)||(9209-9303)
[»] chr8 (1 HSPs)
chr8 (36-126)||(16359257-16359347)
[»] chr4 (4 HSPs)
chr4 (37-130)||(44162082-44162175)
chr4 (54-130)||(26721017-26721093)
chr4 (138-190)||(26720910-26720962)
chr4 (151-191)||(44161963-44162003)
[»] scaffold0036 (2 HSPs)
scaffold0036 (134-197)||(98148-98211)
scaffold0036 (36-126)||(98271-98360)
[»] scaffold0004 (2 HSPs)
scaffold0004 (134-197)||(246456-246519)
scaffold0004 (72-130)||(246575-246633)
[»] chr2 (4 HSPs)
chr2 (65-130)||(10495854-10495919)
chr2 (134-190)||(2986050-2986106)
chr2 (54-110)||(2986154-2986210)
chr2 (133-190)||(10495974-10496031)
[»] chr7 (1 HSPs)
chr7 (133-192)||(41569950-41570009)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 19769433 - 19769250
Alignment:
Q  14 gtgaagtacaaaggaatgtattgtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcg 113  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19769433 gtgaagcataaaggaatgtattgtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcg 19769334  T
Q  114 tcgcggcaagtgcgaggaaatcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagag 197  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19769333 tcgcggcgagtgcgaggaaatcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggaaggagag 19769250  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 45117958 - 45118014
Alignment:
Q  134 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacggga 190  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  45117958 tcgtactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacggga 45118014  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 45117854 - 45117910
Alignment:
Q  54 aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaa 110  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  45117854 aattaaataaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa 45117910  T

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Target: scaffold0361 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 9209 - 9303
Alignment:
Q  36 gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 130  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||    
T  9209 gtattagttaatcaaatcaattaaataaaatagtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcgagg 9303  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 16359347 - 16359257
Alignment:
Q  36 gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgc 126  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||    
T  16359347 gtattagttaatcaaatcaattaaataaaacagtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgc 16359257  T

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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 44162175 - 44162082
Alignment:
Q  37 tattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 130  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||  |||||||||    
T  44162175 tattagttaatcaaatcaattaaataaaatagtgaaattgagtaaaagagcgataacaactaccggagaggaaattgtcgcggagagtgcgagg 44162082  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 26721093 - 26721017
Alignment:
Q  54 aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 130  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  26721093 aattaaataaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggcgagtgtgagg 26721017  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 26720962 - 26720910
Alignment:
Q  138 actggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacggga 190  Q
    |||||||||||| |||||||||||||||||||||| |  ||||||||||||||    
T  26720962 actggcgcatggtgttggtgttgaatgaacgggaatcaaaagaggcaacggga 26720910  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 44162003 - 44161963
Alignment:
Q  151 gttggtgttgaatgaacgggaagcggaagaggcaacgggac 191  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44162003 gttggtgttgaatgaacgggaagcggaagaagcaacgggac 44161963  T

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Target: scaffold0036 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 98211 - 98148
Alignment:
Q  134 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagag 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  98211 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacagagag 98148  T

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Target: scaffold0036; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 98360 - 98271
Alignment:
Q  36 gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgc 126  Q
    |||||||||||||||| ||||||||| |||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  98360 gtattagttaatcaaaacaattaaattaaatagtgaaagtgagtaaa-gagtgataacaaccacctgagaggaaatcgtcgcggccagtgc 98271  T

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Target: scaffold0004 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 246519 - 246456
Alignment:
Q  134 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  246519 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacaggacggagag 246456  T

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Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 246633 - 246575
Alignment:
Q  72 aattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 130  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  246633 aattgagtgagagagcgataacaactacctgagaggaaatcgtcgcggcgagtgcgagg 246575  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 10495854 - 10495919
Alignment:
Q  65 atagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 130  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  10495854 atagtgaatttgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggaaagtgcgagg 10495919  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 2986106 - 2986050
Alignment:
Q  134 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacggga 190  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  2986106 tcgtactggcgcatgatgttggtgttgaatgaacgggaagcgaaagaggcaacggga 2986050  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 2986210 - 2986154
Alignment:
Q  54 aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaa 110  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  2986210 aattaaataaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa 2986154  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 10495974 - 10496031
Alignment:
Q  133 atcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacggga 190  Q
    |||||||| |||||||| ||| |||||||||||||||||| | |||||||||||||||    
T  10495974 atcgtactagcgcatggtgttagtgttgaatgaacgggaaacagaagaggcaacggga 10496031  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 41570009 - 41569950
Alignment:
Q  133 atcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacg 192  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||||||  |||||||    
T  41570009 atcgtactggcgcatggcgctggtgttgaatgagcgggaggcggaagaggcggcgggacg 41569950  T

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