View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18303_high_5 (Length: 402)

Name: NF18303_high_5
Description: NF18303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18303_high_5
NF18303_high_5
[»] chr1 (3 HSPs)
chr1 (1-385)||(19769250-19769634)
chr1 (322-378)||(45117958-45118014)
chr1 (242-298)||(45117854-45117910)
[»] scaffold0361 (2 HSPs)
scaffold0361 (224-318)||(9209-9303)
scaffold0361 (107-225)||(9002-9120)
[»] chr8 (3 HSPs)
chr8 (224-314)||(16359257-16359347)
chr8 (109-225)||(16359446-16359562)
chr8 (107-201)||(36237121-36237215)
[»] chr4 (5 HSPs)
chr4 (225-318)||(44162082-44162175)
chr4 (242-318)||(26721017-26721093)
chr4 (326-378)||(26720910-26720962)
chr4 (339-379)||(44161963-44162003)
chr4 (6-51)||(44162229-44162274)
[»] scaffold0036 (3 HSPs)
scaffold0036 (107-225)||(98418-98536)
scaffold0036 (322-385)||(98148-98211)
scaffold0036 (224-314)||(98271-98360)
[»] scaffold0004 (3 HSPs)
scaffold0004 (322-385)||(246456-246519)
scaffold0004 (107-225)||(246769-246887)
scaffold0004 (260-318)||(246575-246633)
[»] chr3 (2 HSPs)
chr3 (107-201)||(31231278-31231372)
chr3 (5-51)||(32014746-32014792)
[»] chr2 (4 HSPs)
chr2 (253-318)||(10495854-10495919)
chr2 (322-378)||(2986050-2986106)
chr2 (242-298)||(2986154-2986210)
chr2 (321-378)||(10495974-10496031)
[»] chr7 (2 HSPs)
chr7 (321-380)||(41569950-41570009)
chr7 (107-209)||(41570275-41570375)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 19769634 - 19769250
Alignment:
Q  1 taacattaaaacaaaaatgaagattgttagcaagtagagaggaaggaaaaaagaatgatcgctttaatggtaaggtattctgttcagagagatcttcgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19769634 taacattaaaacaaaaatgaagattgttagcaagtagagaggaaggaaaaaagaatgatcgctttaatggtaaggtattctgttcagagagatcttcgct 19769535  T
Q  101 tggatacttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattcca 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19769534 tggatacttaccaggtccaggtatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattcca 19769435  T
Q  201 cgtgaagcataaaggaatgtattgtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19769434 cgtgaagcataaaggaatgtattgtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatc 19769335  T
Q  301 gtcgcggcaagtgcgaggaaatcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagag 385  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19769334 gtcgcggcgagtgcgaggaaatcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggaaggagag 19769250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 45117958 - 45118014
Alignment:
Q  322 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacggga 378  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  45117958 tcgtactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacggga 45118014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 45117854 - 45117910
Alignment:
Q  242 aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaa 298  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  45117854 aattaaataaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa 45117910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 318
Target Start/End: Original strand, 9209 - 9303
Alignment:
Q  224 gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 318  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||    
T  9209 gtattagttaatcaaatcaattaaataaaatagtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcgagg 9303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 9002 - 9120
Alignment:
Q  107 cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa 206  Q
    ||||||| |||||||||||||||| ||||  |||| | || ||| ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  9002 cttaccaagtccaggcatatccaaacgaaggagcagacaatcctctgtctctttcgcatcccaaccacgtcgaactccactgtctccaattccacgtgaa 9101  T
Q  207 gcataaaggaatgtattgt 225  Q
    ||| ||||||||| |||||    
T  9102 gcagaaaggaatggattgt 9120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 16359347 - 16359257
Alignment:
Q  224 gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgc 314  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||    
T  16359347 gtattagttaatcaaatcaattaaataaaacagtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgc 16359257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 16359562 - 16359446
Alignment:
Q  109 taccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaagc 208  Q
    ||||| |||||| ||||||||| ||||  |||| |||| ||| ||||||||||||||||||||| |||| | |||||||| |||||||||||||||||||    
T  16359562 taccaagtccagtcatatccaaacgaaggagcatagaatcctctgtctctttcgcatcccaaccacgtcaagctccaccgtctccaattccacgtgaagc 16359463  T
Q  209 ataaaggaatgtattgt 225  Q
    | |||||| || |||||    
T  16359462 agaaaggactggattgt 16359446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 36237121 - 36237215
Alignment:
Q  107 cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccac 201  Q
    ||||||| |||||||||||||||| |||| ||||| | || ||| | ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  36237121 cttaccaagtccaggcatatccaaacgaagaagcagaaaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccac 36237215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 44162175 - 44162082
Alignment:
Q  225 tattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 318  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||  |||||||||    
T  44162175 tattagttaatcaaatcaattaaataaaatagtgaaattgagtaaaagagcgataacaactaccggagaggaaattgtcgcggagagtgcgagg 44162082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 26721093 - 26721017
Alignment:
Q  242 aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 318  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  26721093 aattaaataaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggcgagtgtgagg 26721017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 26720962 - 26720910
Alignment:
Q  326 actggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacggga 378  Q
    |||||||||||| |||||||||||||||||||||| |  ||||||||||||||    
T  26720962 actggcgcatggtgttggtgttgaatgaacgggaatcaaaagaggcaacggga 26720910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 44162003 - 44161963
Alignment:
Q  339 gttggtgttgaatgaacgggaagcggaagaggcaacgggac 379  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44162003 gttggtgttgaatgaacgggaagcggaagaagcaacgggac 44161963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 44162274 - 44162229
Alignment:
Q  6 ttaaaacaaaaatgaagattgttagcaagtagagaggaaggaaaaa 51  Q
    ||||||||||  ||||||||||||||||| ||||||||||| ||||    
T  44162274 ttaaaacaaagttgaagattgttagcaaggagagaggaaggcaaaa 44162229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 98536 - 98418
Alignment:
Q  107 cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa 206  Q
    ||||||| |||||||||||||||| |||| ||||| |||| ||| | ||||||||||||||||||| |||||||||||||||  |||||||||| | |||    
T  98536 cttaccaagtccaggcatatccaaacgaagaagcagagaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccatgggaa 98437  T
Q  207 gcataaaggaatgtattgt 225  Q
    ||| ||||||||| |||||    
T  98436 gcagaaaggaatggattgt 98418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 98211 - 98148
Alignment:
Q  322 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagag 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  98211 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacagagag 98148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 98360 - 98271
Alignment:
Q  224 gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgc 314  Q
    |||||||||||||||| ||||||||| |||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  98360 gtattagttaatcaaaacaattaaattaaatagtgaaagtgagtaaa-gagtgataacaaccacctgagaggaaatcgtcgcggccagtgc 98271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 246519 - 246456
Alignment:
Q  322 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacggagag 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  246519 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacaggacggagag 246456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 246887 - 246769
Alignment:
Q  107 cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa 206  Q
    ||||||| |||||||||||||||| |||| ||||| |||| ||| |||||||||||||||||| || |||||| |||||||| | ||||| |||||||||    
T  246887 cttaccaagtccaggcatatccaaacgaagaagcagagaatcctctgtctctttcgcatcccagccgcgtcgagctccaccggcaccaatcccacgtgaa 246788  T
Q  207 gcataaaggaatgtattgt 225  Q
    ||| | ||||||| |||||    
T  246787 gcagagaggaatggattgt 246769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 246633 - 246575
Alignment:
Q  260 aattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 318  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  246633 aattgagtgagagagcgataacaactacctgagaggaaatcgtcgcggcgagtgcgagg 246575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 31231372 - 31231278
Alignment:
Q  107 cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccac 201  Q
    ||||||| |||||||||||||||| |||| ||||| |||| ||| | ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  31231372 cttaccaagtccaggcatatccaaacgaagaagcagagaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccac 31231278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 32014746 - 32014792
Alignment:
Q  5 attaaaacaaaaatgaagattgttagcaagtagagaggaaggaaaaa 51  Q
    |||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  32014746 attaaaacaaaattgaagcttgttagcaagtagagaggaaggcaaaa 32014792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 10495854 - 10495919
Alignment:
Q  253 atagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg 318  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  10495854 atagtgaatttgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggaaagtgcgagg 10495919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 2986106 - 2986050
Alignment:
Q  322 tcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacggga 378  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  2986106 tcgtactggcgcatgatgttggtgttgaatgaacgggaagcgaaagaggcaacggga 2986050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 2986210 - 2986154
Alignment:
Q  242 aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaa 298  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  2986210 aattaaataaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa 2986154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 10495974 - 10496031
Alignment:
Q  321 atcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacggga 378  Q
    |||||||| |||||||| ||| |||||||||||||||||| | |||||||||||||||    
T  10495974 atcgtactagcgcatggtgttagtgttgaatgaacgggaaacagaagaggcaacggga 10496031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 380
Target Start/End: Complemental strand, 41570009 - 41569950
Alignment:
Q  321 atcgtactggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacg 380  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||||||  |||||||    
T  41570009 atcgtactggcgcatggcgctggtgttgaatgagcgggaggcggaagaggcggcgggacg 41569950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 41570375 - 41570275
Alignment:
Q  107 cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa 206  Q
    ||||||| |||||||| ||||||| |||| ||| | |||| ||| |||||||  ||||||||| || |||||||||||||   |||| ||||||||||||    
T  41570375 cttaccaagtccaggcgtatccaaacgaagaaggagagaatcctttgtctct--cgcatcccagccgcgtcgaactccacttgctccgattccacgtgaa 41570278  T
Q  207 gca 209  Q
    |||    
T  41570277 gca 41570275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University