View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18303_high_6 (Length: 372)
Name: NF18303_high_6
Description: NF18303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18303_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 39700208 - 39700546
Alignment:
| Q |
18 |
aaaggactcattctctgttctgagattacagtccagagattgttataaatgaatttttgtttctatcacaa-ccttctgacacctgaaatgagagttctt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39700208 |
aaaggactcattctctgttctgagattacagtccagagattgttataaatgaatttttgtttctatcacaaaccttctgacacctgaaatgagagttctt |
39700307 |
T |
|
| Q |
117 |
tgattctttctccattacaatctttgtatcaaatgacttaaaactgtgcaacttgctcaatggttatggaccaaaggctgtctccttaatactataattc |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39700308 |
tgattctttctccattacaatatttgtatcaaatgacttaaaactgtgcaacttgctcaatggttatggaccaaaggctgtctccttaatactataattc |
39700407 |
T |
|
| Q |
217 |
cacctgcttttaaagagtatggtgttgatacttgcaatgattatttatcaccaagttacacaatgacatgcaaataacatctaaagcattaaagcttttt |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39700408 |
cacctgcttttaaagagtatggtgttgattcttgcaatgattatttatcaccaagttacacaatgacatgcaaataacatctaaagcattaaagcttttt |
39700507 |
T |
|
| Q |
317 |
cttggaattactactgtttaaccatttgttattgttcat |
355 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
39700508 |
tttggaattactactgtttagccatttgttattgttcat |
39700546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 9356726 - 9356697
Alignment:
| Q |
112 |
ttctttgattctttctccattacaatcttt |
141 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
9356726 |
ttctttgattctttctccattacaatcttt |
9356697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 9809485 - 9809550
Alignment:
| Q |
18 |
aaaggactcattctctgttctgagattacagtccagagattg-ttataaatgaatttttgtttcta |
82 |
Q |
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|||| ||||||||||| ||||||||| ||||||||||| ||| |||| ||| |||| ||||||||| |
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| T |
9809485 |
aaagaactcattctcttttctgagataacagtccagagtttgcttatgaataaattattgtttcta |
9809550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 7040328 - 7040134
Alignment:
| Q |
18 |
aaaggactcattctctgttctgagattacagtccagagattgttataaatgaatttttgtttctatcacaacctt-ctgacacctgaaatgagagttctt |
116 |
Q |
| |
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|||| |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| || |||| |||||||| |||||||||| |
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| T |
7040328 |
aaagaactcattctctgttttgagattacagtgcggagattgttataaatgaatttttgtttctatcacaaattttctgatacctgaaaagagagttctt |
7040229 |
T |
|
| Q |
117 |
tgattctttctccattacaatctttgtatcaaa-tgacttaaaactgtgcaacttgctcaatggttatggaccaaaggctgtctccttaatacta |
210 |
Q |
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||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
7040228 |
tgattctttctccattacactcttagtatgaaaatgacttaaaactgtgcaacttgctcaatggttatggactaaaggctgtctccgtaatacta |
7040134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 9160076 - 9160221
Alignment:
| Q |
18 |
aaaggactcattctctgttctgagattacagtccagagattgttataaatgaatttttgtttctatcacaa-ccttctgacacctgaaatgagagttctt |
116 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| ||||||||| | |||| ||| ||||||||||| |||||| | ||||||| | ||||| || |
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| T |
9160076 |
aaagaactcattctctgttcgtagattacagtccaga--ttgttataactaaattgttgattctatcacaaaccttctaagacctgaacagcgagttttt |
9160173 |
T |
|
| Q |
117 |
tgattctttctccattacaatctttgtatcaaatgacttaaaactgtg |
164 |
Q |
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||||||||||| |||| |||||| |||||||| ||||||||||||| |
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| T |
9160174 |
caattctttctcctttacgatctttctatcaaattacttaaaactgtg |
9160221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 7044637 - 7044545
Alignment:
| Q |
112 |
ttctttgattctttctccattacaatctttgtatcaaatgacttaaaactgtgcaacttgctcaatggttatggaccaaaggctgtctccttaa |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| || | ||||| ||||||||| |
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| T |
7044637 |
ttctttgattcattctccattacaatctttgtatcaaatgactt-aaactgtgtggcttactcaatggttatgaactataggctatctccttaa |
7044545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 2924627 - 2924670
Alignment:
| Q |
118 |
gattctttctccattacaatctttgtatcaaatgacttaaaact |
161 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
2924627 |
gattctttctccattacaatcattttatcaaatgacttaaaact |
2924670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 7947206 - 7947255
Alignment:
| Q |
26 |
cattctctgttctgagattacagtccagagattgttataaatgaattttt |
75 |
Q |
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|
|||||||| || |||||| ||||||||||||||||||||||| ||||||| |
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| T |
7947206 |
cattctctattttgagataacagtccagagattgttataaataaattttt |
7947255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 15712017 - 15711968
Alignment:
| Q |
30 |
ctctgttctgagattacagtccagagattgttataaatgaatttttgtttc |
80 |
Q |
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|||||||||||||| ||||| || |||||||||||||| |||||||||||| |
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| T |
15712017 |
ctctgttctgagataacagttca-agattgttataaataaatttttgtttc |
15711968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 26944372 - 26944413
Alignment:
| Q |
276 |
acaatgacatgcaaataacatctaaagcattaaagctttttc |
317 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
26944372 |
acaatgacatgcaagtaacatctaaagcattaaaactttttc |
26944413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 40885568 - 40885626
Alignment:
| Q |
23 |
actcattctctgttctgagattacagtccagagattgttataaatgaatttttgtttct |
81 |
Q |
| |
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||||||||||| |||||||| ||||||| |||||||||||||| |||| |||||||| |
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|
| T |
40885568 |
actcattctctattctgagacgacagtccgtagattgttataaataaattgttgtttct |
40885626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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