View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18303_low_1 (Length: 864)

Name: NF18303_low_1
Description: NF18303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18303_low_1
NF18303_low_1
[»] chr5 (33 HSPs)
chr5 (268-849)||(8528269-8528871)
chr5 (12-270)||(9074616-9074874)
chr5 (568-849)||(8534834-8535122)
chr5 (12-270)||(8535453-8535714)
chr5 (12-270)||(8528898-8529156)
chr5 (12-270)||(1600193-1600434)
chr5 (258-475)||(9074891-9075109)
chr5 (259-361)||(8535333-8535435)
chr5 (51-270)||(8636819-8637041)
chr5 (51-270)||(8644164-8644386)
chr5 (369-478)||(8535183-8535294)
chr5 (169-270)||(8677757-8677858)
chr5 (566-849)||(1600713-1600996)
chr5 (268-361)||(1600461-1600554)
chr5 (270-361)||(8677637-8677728)
chr5 (269-361)||(8548273-8548365)
chr5 (53-126)||(2856824-2856897)
chr5 (53-126)||(2874434-2874507)
chr5 (32-121)||(8641475-8641564)
chr5 (264-359)||(8636701-8636796)
chr5 (270-361)||(8644044-8644135)
chr5 (62-124)||(2904941-2905003)
chr5 (51-121)||(8677918-8677988)
chr5 (53-126)||(2844997-2845070)
chr5 (711-766)||(8640893-8640948)
chr5 (270-325)||(8641242-8641297)
chr5 (369-522)||(8548409-8548562)
chr5 (12-137)||(8548002-8548121)
chr5 (171-217)||(8548146-8548192)
chr5 (270-312)||(9003351-9003393)
chr5 (169-245)||(8641343-8641418)
chr5 (373-442)||(1600601-1600670)
chr5 (169-270)||(9003422-9003523)
[»] chr4 (2 HSPs)
chr4 (268-849)||(9442430-9443032)
chr4 (12-270)||(9443059-9443317)
[»] chr7 (5 HSPs)
chr7 (12-270)||(48361745-48362003)
chr7 (12-270)||(35779789-35780041)
chr7 (629-830)||(48362240-48362441)
chr7 (270-336)||(35779694-35779760)
chr7 (268-361)||(48362030-48362128)
[»] chr1 (3 HSPs)
chr1 (44-139)||(26324195-26324290)
chr1 (164-270)||(5130758-5130865)
chr1 (270-361)||(5130638-5130729)
[»] scaffold0627 (2 HSPs)
scaffold0627 (268-361)||(4492-4585)
scaffold0627 (12-136)||(4736-4860)
[»] chr6 (3 HSPs)
chr6 (266-361)||(16716179-16716274)
chr6 (53-124)||(16716447-16716518)
chr6 (176-217)||(16716364-16716405)


Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 268 - 849
Target Start/End: Complemental strand, 8528871 - 8528269
Alignment:
Q  268 ttttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaaaatttt 367  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  8528871 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttt 8528772  T
Q  368 a----------------aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtt 451  Q
    |                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528771 atttttattggcaattgaatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtt 8528672  T
Q  452 tcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaac 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528671 tcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaac 8528572  T
Q  552 gacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttc 648  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||    
T  8528571 gacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgttgtatatatttgttatatttttagttcttttc 8528472  T
Q  649 tgttgtctaatatataccacc--taattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaattacatctta 746  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||    
T  8528471 tgttgtctaatatataccacctttaattacatctttggctttaatagttaatgggaaaaaaatcatgtggacacaatcttttgttactaattacatctta 8528372  T
Q  747 taaattttctttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagta 846  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528371 taaattttctttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagta 8528272  T
Q  847 aat 849  Q
    |||    
T  8528271 aat 8528269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 9074616 - 9074874
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074616 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 9074715  T
Q  112 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggtttatggccgataaaacactttgaagaaggtgctgccatattgttat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074716 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggtttatggccgataaaacactttgaagaaggtgctgccatattgttat 9074815  T
Q  212 atcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttttt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074816 atcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttttt 9074874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 568 - 849
Target Start/End: Complemental strand, 8535122 - 8534834
Alignment:
Q  568 gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatata 664  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||   ||| |||||||||||||| ||||||| |||||  || |||||||||||    
T  8535122 gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttagttattttccattatctaatatata 8535023  T
Q  665 ccacct--aattacatctttg--gctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaattacatcttataaattttctttat 760  Q
    ||||||  |||||||||||||  ||| | |||||||||||        |||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  8535022 ccacctttaattacatctttgtggctctgatagttaatggaaaaaaaatcacgtggacacaatcttttattactaattacatcttataactttcctttat 8534923  T
Q  761 actttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaat 849  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  8534922 actttcgtgttgacggaggagaagaaaatgaatggacagttgttgtaatctcagttatttggatcttctttagttgctaggtagtaaat 8534834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 8535714 - 8535453
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||  |||||    
T  8535714 aaagggatttctttacatttgtgattcgacctttttatctgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttac 8535615  T
Q  112 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggttta---tggccgataaaacactttgaagaaggtgctgccatattgt 208  Q
    |||||||||||||| |||||||||||||   ||| | || || || | |  ||||||   ||||| ||||||||||||||||||||||||||||||||||    
T  8535614 aacattgatacttcattcaatccttcggaaagtcgtgttccacggagatatggtttaagctggccaataaaacactttgaagaaggtgctgccatattgt 8535515  T
Q  209 tatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttttt 270  Q
    ||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  8535514 tatatcattcctgcaattgttttatctactatgaacctgagaaatatggattcgaagttttt 8535453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 8529156 - 8528898
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    |||||||||||| |||||||||||   ||| ||| ||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||||  |||||    
T  8529156 aaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttac 8529057  T
Q  112 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggttta---tggccgataaaacactttgaagaaggtgctgccatattgt 208  Q
    ||||| ||||||||||||||||||| ||    || | || || ||||||  ||||||   ||||||||||||||||||||||||||||||||||||||||    
T  8529056 aacatcgatacttcgttcaatcctttgg---atcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgt 8528960  T
Q  209 tatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttttt 270  Q
     |||||||| || ||||||||||| || ||| |||||||| |||||||| ||||||||||||    
T  8528959 catatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagttttt 8528898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 1600193 - 1600434
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    ||||||||||||||||||||||||||  || ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  1600193 aaagggatttctttacatttgtgact--acctttttatctgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttac 1600290  T
Q  112 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggtttatggccgataaaacactttgaagaaggtgctgccatattgttat 211  Q
    ||    |||||||| ||||||||||            || ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1600291 aagtacgatacttcattcaatcctt------------tttcatggtgttcgggtttatggccgatacaacactttgaagaaggtgctgccatattgttat 1600378  T
Q  212 atcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttttt 270  Q
    || ||   ||||||||||| ||||  |||||||||| ||||||| ||| ||||| ||||    
T  1600379 atgat---tacaattgtttaatctattatgaacctgcgaaatatcgatgcaaagctttt 1600434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 258 - 475
Target Start/End: Original strand, 9074891 - 9075109
Alignment:
Q  258 attcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaag 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| ||||| | |||||||||||||||    
T  9074891 attcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaag 9074990  T
Q  358 gtaa-aattttaaatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttccta 456  Q
    |||| ||| |    ||| ||  || ||  |||| ||||||||||||||||| ||| ||||||| ||  |||| |||||||||||| | || |||||| ||    
T  9074991 gtaagaatgtagcttctaatactttat-tttccgtacaagtcatagtaattaattttaatcataagatgagttttcaaagggactcgagtgagtttctta 9075089  T
Q  457 tgtta-cacttatattttaa 475  Q
    ||||| ||||||||||||||    
T  9075090 tgttaccacttatattttaa 9075109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 259 - 361
Target Start/End: Complemental strand, 8535435 - 8535333
Alignment:
Q  259 ttcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaagg 358  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||    
T  8535435 ttcaaatttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaagg 8535336  T
Q  359 taa 361  Q
    |||    
T  8535335 taa 8535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 8637041 - 8636819
Alignment:
Q  51 tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttatt 150  Q
    ||||||| || |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||| | ||| ||||| |||| | | |  |    
T  8637041 tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatcgatactttggtcagtcctttgggcagacctgat 8636942  T
Q  151 acatggggttcaggtttatg---gccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctg 247  Q
     |   | |||  ||| ||||   |||| |||||||||||||||| || |||||||||||||||||||||| || ||||||| |||||| ||||||||| |    
T  8636941 tcgcagcgttatggtatatgatggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccg 8636842  T
Q  248 agaaatatggattcaaagttttt 270  Q
    |||||  ||| ||||||||||||    
T  8636841 agaaacttggtttcaaagttttt 8636819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 8644386 - 8644164
Alignment:
Q  51 tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttatt 150  Q
    ||||||| || |||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||| | ||| ||||| |||| | | |  |    
T  8644386 tgatgttgcaatgtgggttatgaatgaatatgacattggagaatcatggactaaggtttacaacattgatactttgatcagtcctttgggcagacctgat 8644287  T
Q  151 acatggggttcaggttta---tggccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctg 247  Q
     |   | |||  ||||||   |||||| ||||| |||||||||| || |||||||||||||||||||||| || ||||||| |||||| |||||||||      
T  8644286 tcgcagcgttatggtttatgttggccggtaaaaaactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaaccca 8644187  T
Q  248 agaaatatggattcaaagttttt 270  Q
    ||||| |||  ||||||||||||    
T  8644186 agaaacatgctttcaaagttttt 8644164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 369 - 478
Target Start/End: Complemental strand, 8535294 - 8535183
Alignment:
Q  369 aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cactt 466  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||| || ||    
T  8535294 aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcctatgttaccagtt 8535195  T
Q  467 atattttaaact 478  Q
    ||||||||||||    
T  8535194 atattttaaact 8535183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 8677858 - 8677757
Alignment:
Q  169 tggccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttt 268  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||| ||||||||| |||||| |||| ||||||||||    
T  8677858 tggccggtaaaacactttgaagagggtgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttcaaagttt 8677759  T
Q  269 tt 270  Q
    ||    
T  8677758 tt 8677757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 566 - 849
Target Start/End: Original strand, 1600713 - 1600996
Alignment:
Q  566 aggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgt-------atatatttgttataattttagttcttttctgttgtctaa 658  Q
    ||||||| |||||||  |||||| ||||||| ||| |||||||||||||| |||       || | ||| |||||||| ||||| ||||  ||| |||||    
T  1600713 aggttgtgatgtttccgcaatcaattgcttttacaactaatatatttatggtgttgtttatattttttttttataattatagtttttttg-gttatctaa 1600811  T
Q  659 tatataccacct--aattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaattacatcttataaattttct 756  Q
    ||| ||||||||  |||||||| | ||||| | ||||||||| ||       |||||||||| ||||||||||||||||||||||||   ||||||| ||    
T  1600812 tatctaccacctttaattacatatctggctctgatagttaataggaaaaaaatcacgtggacgcaatcttttgttactaattacatc---taaatttcct 1600908  T
Q  757 ttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaat 849  Q
     |||||||||||||||||||||| | ||||    ||||||||||||||||| |||| |||||||| |  ||| |||||||||| |||||||||    
T  1600909 atatactttcgtgttgatggaggaggagaa----aatggacagttgttgtaatgtcagttatttgaacgttc-ttagttgctaagtagtaaat 1600996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 1600461 - 1600554
Alignment:
Q  268 ttttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaa 361  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| | || ||||||||| | |||||||||||||||||||    
T  1600461 ttttgaaataatcccgcatattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaa 1600554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 8677728 - 8677637
Alignment:
Q  270 ttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaa 361  Q
    ||||| |||| |||||| ||||||||||||| ||||||||||||||| ||||||||| || ||||||||| | |||||||||||||||||||    
T  8677728 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaa 8677637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 269 - 361
Target Start/End: Original strand, 8548273 - 8548365
Alignment:
Q  269 tttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaa 361  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||  ||||||||| || ||||||||| | |||||||||||||| ||||    
T  8548273 tttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 8548365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 2856824 - 2856897
Alignment:
Q  53 atgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcg 126  Q
    ||||| || |||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||    
T  2856824 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatacttcg 2856897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 2874434 - 2874507
Alignment:
Q  53 atgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcg 126  Q
    ||||| || |||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||    
T  2874434 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatacttcg 2874507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 8641564 - 8641475
Alignment:
Q  32 gtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgata 121  Q
    |||||| ||| ||||| | ||||||  ||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||    
T  8641564 gtgactcgacctttttctttgatgtcacagtgtgggttatgaatgaatatggcattggagaatcatggactaaggcttacaacattgata 8641475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 8636796 - 8636701
Alignment:
Q  264 agttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggt 359  Q
    ||||| ||||| |||| |||||| ||||||||||||| ||||||||||||||  ||||||||| || ||| ||||| | |||||||||||||||||    
T  8636796 agtttgttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 8644135 - 8644044
Alignment:
Q  270 ttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaa 361  Q
    ||||| |||| |||||| ||||||||||||| ||||||||||||||| ||||||||| || || |||| | | |||||||||||||||||||    
T  8644135 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaa 8644044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 2904941 - 2905003
Alignment:
Q  62 tgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatactt 124  Q
    |||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  2904941 tgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt 2905003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 8677988 - 8677918
Alignment:
Q  51 tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgata 121  Q
    ||||||| || |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||    
T  8677988 tgatgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacattgata 8677918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 2844997 - 2845070
Alignment:
Q  53 atgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcg 126  Q
    ||||| || |||||||||||||||||||||| |||| ||||||||||||||  ||||||| |||||||||||||    
T  2844997 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacagcattgatacttcg 2845070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 711 - 766
Target Start/End: Complemental strand, 8640948 - 8640893
Alignment:
Q  711 acgtggacacaatcttttgttactaattacatcttataaattttctttatactttc 766  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  8640948 acgtggacacaatctttcgttactaatgacatcttataaatttcctttatactttc 8640893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 8641297 - 8641242
Alignment:
Q  270 ttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaagga 325  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||  ||||||||    
T  8641297 ttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 522
Target Start/End: Original strand, 8548409 - 8548562
Alignment:
Q  369 aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta 467  Q
    |||||||||||||||||| || || || ||||||||||| ||| ||||||| ||  |||||||||||||| | ||||| | |||  | ||||||  ||||    
T  8548409 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 8548508  T
Q  468 tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtta 522  Q
    || ||||||||| |||||||  ||||| ||||||| ||| |||| | ||||||||    
T  8548509 ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtta 8548562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 8548002 - 8548121
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    |||||||| ||||||||||||||||||||  | | | ||| ||||| || ||||||||||||| ||||||||      ||| |||||||||||  |||||    
T  8548002 aaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaatatgg------agagtcatggactaagatttac 8548095  T
Q  112 aacattgatacttcgttcaatccttc 137  Q
     |||||||||||| |  |||||||||    
T  8548096 cacattgatactttgaccaatccttc 8548121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 8548146 - 8548192
Alignment:
Q  171 gccgataaaacactttgaagaaggtgctgccatattgttatatcatt 217  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||||    
T  8548146 gccggtaaaacactttgaagagggtgctgccgtattgttatatcatt 8548192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 9003393 - 9003351
Alignment:
Q  270 ttgaagtaatcccacatattccaagtctaatttcattgaagga 312  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  9003393 ttgaagtaattccacatattccaagtctaatctcattgaagga 9003351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 8641418 - 8641343
Alignment:
Q  169 tggccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacc 245  Q
    |||||| ||| |||||||||||| ||||||||  ||| ||||||||||| || |||||| ||||||| |||||||||    
T  8641418 tggccggtaatacactttgaagatggtgctgcgttatggttatatcattcctgcaattg-tttatctactatgaacc 8641343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 442
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
Q  373 tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt 442  Q
    ||||||| |||| | || ||||||||||||||||| ||| ||||||| || | ||| |||||||||||||    
T  1600601 tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt 1600670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 9003523 - 9003422
Alignment:
Q  169 tggccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttt 268  Q
    |||||| ||||||  ||||||||  |||||  ||||||||| ||| | |  |||||||||||  ||| ||||||||| |||||| ||||||||| |||||    
T  9003523 tggccggtaaaactgtttgaagagagtgcttgcatattgttttatgaatcgtacaattgtttagtctactatgaacccgagaaacatggattcagagttt 9003424  T
Q  269 tt 270  Q
    ||    
T  9003423 tt 9003422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 268 - 849
Target Start/End: Complemental strand, 9443032 - 9442430
Alignment:
Q  268 ttttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaaaatttt 367  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  9443032 ttttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttt 9442933  T
Q  368 a----------------aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtt 451  Q
    |                |||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  9442932 atttttattggcaattgaatctgatggttgatgcttctttacaagtcatagtaattgattgtaatcatgagatgagtattcaaagggacttgtgtaagtt 9442833  T
Q  452 tcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaac 551  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  9442832 tcctatgttacacttatattttaaacttactattttgccattccatttggagaaaagaaaacatgttgttaggttacttcggttgatatattctcacaac 9442733  T
Q  552 gacatgttg-----------gagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattt 637  Q
    |||||||||           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||| |||    
T  9442732 gacatgttggagacatgttggagaaaggttgtgatgtttcgtcaatcatttgctttcgcagctaatatatttatgatgttgtatatatttgttatatttt 9442633  T
Q  638 tagttcttttctgttgtctaatatataccacc--taattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttacta 735  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  9442632 tagttcttttctgttgtctaatatataccacctttaattacatctttggctttaatagttaatgggaaaaaaatcacgtggacacaatcttttgttacta 9442533  T
Q  736 attacatcttataaattttctttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagtt 835  Q
    ||||||||||||||||           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442532 attacatcttataaat-----------tttcgtgttgatggaggcgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagtt 9442444  T
Q  836 gctaggtagtaaat 849  Q
    |||| |||||||||    
T  9442443 gctatgtagtaaat 9442430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 9443317 - 9443059
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    |||||||||||| |||||||||||   ||| ||| ||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||||  |||||    
T  9443317 aaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttac 9443218  T
Q  112 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggttta---tggccgataaaacactttgaagaaggtgctgccatattgt 208  Q
    ||||| ||||||||||||||||||| ||    || | || || ||||||  ||||||   ||||||||||||||||||||||||||||||||||||||||    
T  9443217 aacatcgatacttcgttcaatcctttgg---atcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgt 9443121  T
Q  209 tatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttttt 270  Q
     |||||||| || ||||||||||| || ||| |||||||| |||||||| ||||||||||||    
T  9443120 catatcattccttcaattgttttacctactacgaacctgaaaaatatgggttcaaagttttt 9443059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 3e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 48361745 - 48362003
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    |||||||||||||||||||||||||| ||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  48361745 aaagggatttctttacatttgtgactcgacctttgcatctgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttac 48361844  T
Q  112 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggtttatggccgataaaacactttgaagaaggtgctgccatattgttat 211  Q
    |||||  ||||| |||||||||||||| || || ||  | | |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48361845 aacatcaatactgcgttcaatccttcgagcagttttgcttcttggcattcagctttatggccgataaaacactttgaagaaggtgctgccatattgttat 48361944  T
Q  212 atcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttttt 270  Q
    |||||| |||| |  |||| ||||  |||||||||||||||||| ||| ||||| ||||    
T  48361945 atcattcctacgaccgtttaatctattatgaacctgagaaatatagatgcaaagctttt 48362003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 35780041 - 35779789
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    |||||||||||||||||||||||||| ||  |||||   ||||||| || ||||||||||||||||  |||| ||||||||||| |||||||| ||||||    
T  35780041 aaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaatcgtggactaaggtttac 35779942  T
Q  112 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggttta---tggccgataaaacactttgaagaaggtgctgccatattgt 208  Q
    |||||||| |||||| ||||| ||   |||| || |||| ||  | |||  ||||||   |||||| |||||| ||||||         |||||||||||    
T  35779941 aacattgagacttcggtcaattctctaggctatcctatttcaccgcgttatggtttatgttggccggtaaaaccctttga---------tgccatattgt 35779851  T
Q  209 tatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagttttt 270  Q
    |||||||||  | |||||||||||||| || |||||||||||||||||||| ||||||||||    
T  35779850 tatatcattcatgcaattgttttatctactttgaacctgagaaatatggatacaaagttttt 35779789  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 629 - 830
Target Start/End: Original strand, 48362240 - 48362441
Alignment:
Q  629 ttataattttagttcttttctgttgtctaatatataccacct--aattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatctt 726  Q
    |||||||||||||| |||||  || |||||||| ||||||||  |||||||||| || || | |||||||||||        ||| |||| ||||||| |    
T  48362240 ttataattttagttattttcc-ttatctaatatctaccacctttaattacatctctg-ctctgatagttaatggaaaaaaaatcaggtgggcacaatcct 48362337  T
Q  727 ttgttactaattacatcttataaattttctttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatct 826  Q
    | ||||| ||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||  |||||||||| |||| |||||||||| ||    
T  48362338 tcgttaccaattacatcttataaatttcctttatactttcgtgttgatggaggacgagaaaatgaatgggaagttgttgtaatgtcagttatttggacct 48362437  T
Q  827 tctt 830  Q
    ||||    
T  48362438 tctt 48362441  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 35779760 - 35779694
Alignment:
Q  270 ttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattga 336  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||| || ||||||    
T  35779760 ttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga 35779694  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 48362030 - 48362128
Alignment:
Q  268 ttttgaagtaatcccacatattccaagtc-----taatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaa 361  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||| ||||||||||  | ||| |||||   |||| ||||||||||||||    
T  48362030 ttttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaa 48362128  T

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Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 26324195 - 26324290
Alignment:
Q  44 ttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgg 139  Q
    ||||||||||||||||| |||||||||||||||||||||| | || |||||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  26324195 ttttatctgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaacatcgatgcttcgttcaatccttcgg 26324290  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 5130865 - 5130758
Alignment:
Q  164 gtttatggccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatctt-ctatgaacctgagaaatatggattca 262  Q
    |||| |||||| |||||||||||||||| ||||||||||||||| ||||||||| || ||| |||||| |||| | ||||||| ||||||||| ||| ||    
T  5130865 gtttttggccggtaaaacactttgaagagggtgctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaaatatagataca 5130766  T
Q  263 aagttttt 270  Q
    ||||||||    
T  5130765 aagttttt 5130758  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 5130729 - 5130638
Alignment:
Q  270 ttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaa 361  Q
    |||||||||| ||||||||| |||||||||||||| | |||||| || ||||||||| || ||||||||| | |||||| ||||||||||||    
T  5130729 ttgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaatattgaggtgctgaatattcactcaaggtaa 5130638  T

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Target: scaffold0627 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 4585 - 4492
Alignment:
Q  268 ttttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaa 361  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||   ||||||||| || |||||||||   |||||||||||||||||||    
T  4585 ttttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaa 4492  T

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Target: scaffold0627; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 4860 - 4736
Alignment:
Q  12 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 111  Q
    ||||||||||||||||||||||||||  |  |  |||    ||||| || |||||||||||||||||||||| ||||  |||||||||||||| ||||||    
T  4860 aaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaatcatggactaaggtttac 4761  T
Q  112 aacattgatacttcgttcaatcctt 136  Q
     ||||| |||||| || ||||||||    
T  4760 cacattaatactttgtacaatcctt 4736  T

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Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 16716274 - 16716179
Alignment:
Q  266 ttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgttttgaaaggagtcagtattgaggttccgaatatccactcaaggtaa 361  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||   |||||||||  | |||||||||   |||||||||||||||||||    
T  16716274 ttttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaa 16716179  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 16716518 - 16716447
Alignment:
Q  53 atgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatactt 124  Q
    ||||| || |||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||||    
T  16716518 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttaccacattgatactt 16716447  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 16716405 - 16716364
Alignment:
Q  176 taaaacactttgaagaaggtgctgccatattgttatatcatt 217  Q
    |||||||||||||||| ||||||| | |||||||||||||||    
T  16716405 taaaacactttgaagagggtgctggcgtattgttatatcatt 16716364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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