View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18303_low_3 (Length: 544)

Name: NF18303_low_3
Description: NF18303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18303_low_3
NF18303_low_3
[»] chr2 (3 HSPs)
chr2 (12-524)||(43111095-43111605)
chr2 (454-512)||(42915228-42915286)
chr2 (464-512)||(5089743-5089791)
[»] chr6 (7 HSPs)
chr6 (393-524)||(11956064-11956199)
chr6 (394-524)||(13660449-13660581)
chr6 (393-524)||(29326249-29326383)
chr6 (454-512)||(17289674-17289732)
chr6 (454-512)||(19478803-19478861)
chr6 (464-524)||(3902875-3902935)
chr6 (464-512)||(10485764-10485812)
[»] chr3 (10 HSPs)
chr3 (393-524)||(11777227-11777360)
chr3 (392-524)||(6025730-6025860)
chr3 (454-512)||(53120186-53120244)
chr3 (397-524)||(21493660-21493788)
chr3 (454-512)||(13022714-13022772)
chr3 (454-524)||(26929365-26929435)
chr3 (454-512)||(33088686-33088744)
chr3 (453-512)||(38436339-38436398)
chr3 (454-512)||(26962689-26962747)
chr3 (454-526)||(20811063-20811135)
[»] chr8 (6 HSPs)
chr8 (453-511)||(13584836-13584894)
chr8 (454-512)||(19430698-19430756)
chr8 (454-512)||(19436140-19436198)
chr8 (454-512)||(19566847-19566905)
chr8 (454-512)||(19572289-19572347)
chr8 (464-512)||(33616144-33616192)
[»] chr1 (5 HSPs)
chr1 (454-512)||(38734791-38734849)
chr1 (454-512)||(13891470-13891528)
chr1 (454-512)||(31289420-31289478)
chr1 (454-512)||(39746744-39746802)
chr1 (487-520)||(12179359-12179392)
[»] scaffold0067 (1 HSPs)
scaffold0067 (454-523)||(33369-33438)
[»] chr7 (6 HSPs)
chr7 (454-519)||(47762370-47762435)
chr7 (453-512)||(7357999-7358058)
chr7 (453-512)||(28291911-28291970)
chr7 (454-512)||(9973934-9973992)
chr7 (454-512)||(24529055-24529113)
chr7 (454-512)||(33226984-33227042)
[»] chr4 (3 HSPs)
chr4 (464-512)||(24490759-24490807)
chr4 (454-512)||(10119876-10119934)
chr4 (454-524)||(10318248-10318318)
[»] scaffold0011 (2 HSPs)
scaffold0011 (464-512)||(2291-2339)
scaffold0011 (464-512)||(7545-7593)
[»] scaffold0132 (2 HSPs)
scaffold0132 (454-512)||(2491-2549)
scaffold0132 (454-512)||(10451-10509)


Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 524
Target Start/End: Original strand, 43111095 - 43111605
Alignment:
Q  12 gagagatgaaagggtatttatagtgaacaatacaaggtgtgaccgtgaagcctaactcaaaaataacaaaggttttgattccaattccaatgggatatta 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43111095 gagaaatgaaagggtatttatagtgaacaatacaaggtgtgaccgtgaagcctaactcaaaaataacaaaggttttgattccaattccaatgggatatta 43111194  T
Q  112 caaattgtggttttgattcttaattaaattgaattacaaccgttggattttatgaactttagtttggtcaagtaatagagggcaaagattgtgtgnnnnn 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  43111195 caaattgtggttttgattcttaattaaattgaattacaaccgttggattttatgaactttagtttggtcaagtaatagagggcaaagattgtgt-aaaaa 43111293  T
Q  212 nngaatattcgaggggaatttatttagagtagttggccatatatgaaatccacttccattgtctagaggaatattccacctacgttctaattcgtattta 311  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43111294 aagaatattcgaggggaatttatttagagtagttggccatatatgaaatccacttccgttgtctagaggaatattccacctacgttctaattcgtattta 43111393  T
Q  312 agttcaattaatactattgacc-nnnnnnnnngttcaattaatactaatatactatatttttgttttggttagaatgatatatgttggaacactgattaa 410  Q
    ||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  43111394 agttcaattaatactattgaccaaaaaaaaaagttcaattaatactaatatactatatttttgttttggttagaatg--atatgttggaacactggttaa 43111491  T
Q  411 ttctagtggaagttggatggaaaaatgcaaggtaagaattaccgtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatat 510  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  43111492 ttctagtggaagttggatagaaaaatgcaaggtaagaattaccgtgtgacttaaaaatgtcccatattagtgagccacaccaactagcaagtgtttatat 43111591  T
Q  511 aaaggtggggtgac 524  Q
    || |||||||||||    
T  43111592 aagggtggggtgac 43111605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 42915286 - 42915228
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  42915286 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 42915228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 5089791 - 5089743
Alignment:
Q  464 aaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    ||||||||||| ||| |||||||||||||| ||| ||||||||||||||    
T  5089791 aaaatgtcccacattggtgagccacaccaattagaaagtgtttatataa 5089743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 524
Target Start/End: Original strand, 11956064 - 11956199
Alignment:
Q  393 tgttggaacactgattaattctagtggaagttggatggaaaaatgcaaggtaagaattaccgtg----tgattttaaaatgtcccatattagtgagccac 488  Q
    ||||||||||||  || ||||||||||||||||||| ||||||||||||||||||| ||  |||    ||| || ||||||| ||| ||  |||||||||    
T  11956064 tgttggaacactagttgattctagtggaagttggatagaaaaatgcaaggtaagaactagtgtgtgtatgacttaaaaatgttccacataggtgagccac 11956163  T
Q  489 accaactagcaagtgtttatataaaggtggggtgac 524  Q
    || |||||| |||||||||||||| |||||||||||    
T  11956164 actaactagaaagtgtttatataagggtggggtgac 11956199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 394 - 524
Target Start/End: Complemental strand, 13660581 - 13660449
Alignment:
Q  394 gttggaacactgattaattctagtggaagttggatggaaaaatgcaaggtaagaattaccgtgtg--attttaaaatgtcccatattagtgagccacacc 491  Q
    |||||||||||  |||||||||||||||||||||| ||||||   |||||||||| ||  |||||  | || ||||| ||  ||||| |||||||||||     
T  13660581 gttggaacactagttaattctagtggaagttggatagaaaaacataaggtaagaactagtgtgtgtgacttaaaaatatcttatattggtgagccacact 13660482  T
Q  492 aactagcaagtgtttatataaaggtggggtgac 524  Q
    ||||||||||||||||||||| |||||| ||||    
T  13660481 aactagcaagtgtttatataagggtgggatgac 13660449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 393 - 524
Target Start/End: Complemental strand, 29326383 - 29326249
Alignment:
Q  393 tgttggaacactgattaattctagtggaa-gttggatggaaaaatgcaaggtaagaattaccgtg--tgattttaaaatgtcccatattagtgagccaca 489  Q
    ||||||||||||  |||||||||||| || ||||||| ||||||  | | ||||||||||  |||  ||| || |||||||| || ||| ||||| ||||    
T  29326383 tgttggaacactagttaattctagtgaaaagttggatagaaaaacactatgtaagaattagtgtgcgtgacttaaaaatgtctcacattggtgaggcaca 29326284  T
Q  490 ccaactagcaagtgtttatataaaggtggggtgac 524  Q
    ||||||||||||||||||||||| |||||||||||    
T  29326283 ccaactagcaagtgtttatataagggtggggtgac 29326249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 17289674 - 17289732
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  17289674 gtgtgacttaaaaatgtcccacattggtgagccacaccaacaagcaagtgtttatataa 17289732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 19478861 - 19478803
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  19478861 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 19478803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 524
Target Start/End: Complemental strand, 3902935 - 3902875
Alignment:
Q  464 aaaatgtcccatattagtgagccacaccaactagcaagtgtttatataaaggtggggtgac 524  Q
    ||||||||| | ||| ||||  ||||||||||||||||||||||||||| |||||||||||    
T  3902935 aaaatgtcctacattggtgaatcacaccaactagcaagtgtttatataagggtggggtgac 3902875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 10485812 - 10485764
Alignment:
Q  464 aaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  10485812 aaaatgttccacattggtgagccacaccaactagcaagtgtttatataa 10485764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 524
Target Start/End: Complemental strand, 11777360 - 11777227
Alignment:
Q  393 tgttggaacactgattaattctagtggaagttggatggaaaaatgcaaggtaagaatta--ccgtgtgattttaaaatgtcccatattagtgagccacac 490  Q
    ||||||||||||  || ||||||||||||||||||| ||||||  || |||||||| ||    |||||| || ||||||||||| ||| |||||||||||    
T  11777360 tgttggaacactcgttgattctagtggaagttggatagaaaaacacatggtaagaactagtgtgtgtgacttaaaaatgtcccacattggtgagccacac 11777261  T
Q  491 caactagcaagtgtttatataaaggtggggtgac 524  Q
     ||||||||||||||||||||| ||| |||||||    
T  11777260 taactagcaagtgtttatataagggtagggtgac 11777227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 392 - 524
Target Start/End: Complemental strand, 6025860 - 6025730
Alignment:
Q  392 atgttggaacactgattaattctagtggaagttggatggaaaaatgcaaggtaagaattaccgtgtgattttaaaatgtcccatattagtgagccacacc 491  Q
    |||||||||||||  |||||||||||||||||||||  ||||||  |||||||| |||    ||||||||| |||||||| || ||| ||||| |||||     
T  6025860 atgttggaacactagttaattctagtggaagttggaaagaaaaacacaaggtaaaaatgt--gtgtgatttaaaaatgtctcacattggtgagtcacact 6025763  T
Q  492 aactagcaagtgtttatataaaggtggggtgac 524  Q
    ||||||||||||||||||||| | |||||||||    
T  6025762 aactagcaagtgtttatataaggatggggtgac 6025730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 53120244 - 53120186
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  53120244 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 53120186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 524
Target Start/End: Original strand, 21493660 - 21493788
Alignment:
Q  397 ggaacactgattaattctagtggaagttggatggaaaaatgcaaggtaagaattaccgtgtgattttaaaatgtcccatattagtgagccacaccaacta 496  Q
    ||||||||  |||||| ||||||||||||||| ||||||  |||||||| || ||  || ||| || |||||||| || ||| |||||||| || |||||    
T  21493660 ggaacactagttaattatagtggaagttggatagaaaaacacaaggtaaaaactagtgtttgacttaaaaatgtctcacatttgtgagccaaacaaacta 21493759  T
Q  497 gcaagt-gtttatataaaggtggggtgac 524  Q
    |||| |  ||||||||| |||||||||||    
T  21493760 gcaactattttatataagggtggggtgac 21493788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 13022772 - 13022714
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||| ||| ||||||||||||||    
T  13022772 gtgtgacttaaaaatgtcccacattggtgagccacaccaattagaaagtgtttatataa 13022714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 524
Target Start/End: Complemental strand, 26929435 - 26929365
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataaaggtggggtgac 524  Q
    |||||| || |||||||  || ||| |||||  |||||||||||||||||||||||||| |||||||||||    
T  26929435 gtgtgacttaaaaatgtttcacattggtgagttacaccaactagcaagtgtttatataagggtggggtgac 26929365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 33088686 - 33088744
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||| ||||||||| ||||||||||||||    
T  33088686 gtgtgacttaaaaatgtcccacattggtgagccaaaccaactagaaagtgtttatataa 33088744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 512
Target Start/End: Original strand, 38436339 - 38436398
Alignment:
Q  453 cgtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    ||||||| || ||||||||||| ||| |||||||||| ||||||  ||||||||||||||    
T  38436339 cgtgtgacttaaaaatgtcccacattggtgagccacatcaactaaaaagtgtttatataa 38436398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 26962747 - 26962689
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || |||| ||| || ||| |||||||||||||||||| ||||||||||||||    
T  26962747 gtgtgacttaaaaaagtctcacattggtgagccacaccaactagaaagtgtttatataa 26962689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 526
Target Start/End: Complemental strand, 20811135 - 20811063
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataaaggtggggtgactt 526  Q
    |||||| || ||||||||||| ||| || | ||||| ||||||  |||||||||||||||||| | |||||||    
T  20811135 gtgtgacttaaaaatgtcccacattggtaaaccacatcaactaaaaagtgtttatataaaggtagagtgactt 20811063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 453 - 511
Target Start/End: Complemental strand, 13584894 - 13584836
Alignment:
Q  453 cgtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatata 511  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  13584894 cgtgtgatttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatata 13584836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 19430756 - 19430698
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  19430756 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 19430698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 19436198 - 19436140
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  19436198 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 19436140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 19566905 - 19566847
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  19566905 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 19566847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 19572347 - 19572289
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  19572347 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 19572289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 33616144 - 33616192
Alignment:
Q  464 aaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||||| || ||| |||||||||||||||||| ||||||||||||||    
T  33616144 aaaatgtctcacattggtgagccacaccaactagaaagtgtttatataa 33616192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 38734849 - 38734791
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38734849 gtgtgacttaaaaatgtcccatattggtgagccacaccaactagaaagtgtttatataa 38734791  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 13891528 - 13891470
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  13891528 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 13891470  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 31289478 - 31289420
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  31289478 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 31289420  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 39746744 - 39746802
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || |||||||  |||||| |||||||||||||||||| ||||||||||||||    
T  39746744 gtgtgacttaaaaatgtttcatattggtgagccacaccaactagaaagtgtttatataa 39746802  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 520
Target Start/End: Complemental strand, 12179392 - 12179359
Alignment:
Q  487 acaccaactagcaagtgtttatataaaggtgggg 520  Q
    |||||||||||||||||||||||||| |||||||    
T  12179392 acaccaactagcaagtgtttatataagggtgggg 12179359  T

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Target: scaffold0067 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 33369 - 33438
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataaaggtggggtga 523  Q
    |||||| || ||||||||||| |||  ||||||||||||||||||||||||||||||||  |||||||||    
T  33369 gtgtgacttaaaaatgtcccacattgatgagccacaccaactagcaagtgtttatataagagtggggtga 33438  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 47762435 - 47762370
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataaaggtggg 519  Q
    |||||| || ||||||| ||| |||||||||||||||||||||| || ||||||||||||||||||    
T  47762435 gtgtgacttaaaaatgttccacattagtgagccacaccaactagtaaatgtttatataaaggtggg 47762370  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 512
Target Start/End: Complemental strand, 7358058 - 7357999
Alignment:
Q  453 cgtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    ||||||| || ||||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  7358058 cgtgtgacttaaaaatgtcccatattggtgagccacaccaattagaaagtgtttatataa 7357999  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 512
Target Start/End: Original strand, 28291911 - 28291970
Alignment:
Q  453 cgtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    ||||||| || ||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  28291911 cgtgtgacttaaaaatgtcccatattggtgagctacaccaactagaaagtgtttatataa 28291970  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 9973992 - 9973934
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| || |||| ||||||    
T  9973992 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaattgttaatataa 9973934  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 24529113 - 24529055
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||| ||| | ||| |||||||||||||||||| ||||||||||||||    
T  24529113 gtgtgacttaaaaatatcctacattggtgagccacaccaactagaaagtgtttatataa 24529055  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 33227042 - 33226984
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||| ||| ||| ||||| |||||||||||| ||||||||||||||    
T  33227042 gtgtgacttaaaaatgttccacattggtgagtcacaccaactagaaagtgtttatataa 33226984  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 24490807 - 24490759
Alignment:
Q  464 aaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||    
T  24490807 aaaatgtcccatattggagagccacaccaactagcaagtgtttatataa 24490759  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 10119876 - 10119934
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  10119876 gtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 10119934  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 524
Target Start/End: Original strand, 10318248 - 10318318
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataaaggtggggtgac 524  Q
    ||||||||| |||||||| || |||  |||||||||||||||| |||||| |||||||| |||||| ||||    
T  10318248 gtgtgatttaaaaatgtctcacattgatgagccacaccaactaacaagtgattatataagggtgggatgac 10318318  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 2339 - 2291
Alignment:
Q  464 aaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  2339 aaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 2291  T

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Target: scaffold0011; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 7593 - 7545
Alignment:
Q  464 aaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    ||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  7593 aaaatgtcccacattggtgagccacaccaactagaaagtgtttatataa 7545  T

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Target: scaffold0132 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 2491 - 2549
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| |||  ||||||||||||||||| |||| |||||||||    
T  2491 gtgtgacttaaaaatgtcccacattgttgagccacaccaactagaaagtatttatataa 2549  T

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Target: scaffold0132; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 10451 - 10509
Alignment:
Q  454 gtgtgattttaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataa 512  Q
    |||||| || ||||||||||| |||  ||||||||||||||||| |||| |||||||||    
T  10451 gtgtgacttaaaaatgtcccacattgttgagccacaccaactagaaagtatttatataa 10509  T

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