View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18303_low_6 (Length: 407)
Name: NF18303_low_6
Description: NF18303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18303_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43383695 - 43383943
Alignment:
| Q |
1 |
ggaaggacgttcatgacgcctcacgatgacacaatgactcgtggtggaaacgtgg------aaggggaagcggttaataataatgagatgataaactgca |
94 |
Q |
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| T |
43383695 |
ggaaggacgttcatgacgcctcacgatgacacaatgactcgtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgca |
43383794 |
T |
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| Q |
95 |
tcatcggacacaagtgtagcatatgtttgagggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaaccca---- |
190 |
Q |
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| T |
43383795 |
tcatcggacacaagtgtagcatatgtttgagggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccaaaac |
43383894 |
T |
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| Q |
191 |
--caacaccaacaccaacactaccatttgatttgaatttcccttttcca |
237 |
Q |
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| T |
43383895 |
accaacaccaacaccaacactaccatttgatttgaatttcccttttcca |
43383943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 25870423 - 25870613
Alignment:
| Q |
44 |
gtggaaacgtggaaggggaagcggttaataataatgaga-tgataa--actgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
140 |
Q |
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| T |
25870423 |
gtggaaacgttgaaggggaagaggttaatagtaataataataataatgactgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
25870522 |
T |
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| Q |
141 |
acaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccacaacaccaacaccaacactaccatttgatttgaatttcccttttcca |
237 |
Q |
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| T |
25870523 |
acaagcactcggtggtcataagaggtgtcattgggataaaggggaaccca------cgacaccaacactaccatttgatttgaatttcccttttcca |
25870613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 262 - 392
Target Start/End: Original strand, 45272955 - 45273085
Alignment:
| Q |
262 |
tcttgtcctcatcgtcatgtttttcattagattcttcatatttattttcttgtaatgatgctgcaatctttacctcagctacattcctttcaatttcttt |
361 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45272955 |
tcttgtcctcatcatcatgtttttcattagattcttcatatttattttcttgtaatgatgctgcaatctttacctcagctacattcctttcaatttcttt |
45273054 |
T |
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| Q |
362 |
acatttttctaggtcgtgatctttgcttcct |
392 |
Q |
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| T |
45273055 |
acatttttctaggtcgtgatctttgcttcct |
45273085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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