View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18304_high_12 (Length: 342)

Name: NF18304_high_12
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18304_high_12
NF18304_high_12
[»] chr6 (5 HSPs)
chr6 (17-93)||(2096411-2096487)
chr6 (257-330)||(2096242-2096315)
chr6 (19-97)||(2105461-2105542)
chr6 (109-169)||(2105327-2105386)
chr6 (223-260)||(2105249-2105286)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 2096487 - 2096411
Alignment:
Q  17 acaaaccaacttactggattattcctctgtgcgattgcaataccacaacgatgcatctggacaagaaagtaaaacag 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2096487 acaaaccaacttactggattattcctctgtgcgattgcaataccacaacgatgcatctggacaagaaagtaaaacag 2096411  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 2096315 - 2096242
Alignment:
Q  257 atgtatcatcaagttgtgcattgcattttcagagacgacaacaacaatcaagttttatctcgctaagtataatc 330  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||    
T  2096315 atgtatcatcaagtgttgcattgcatttttagagacgacaacaacaattaagttttatctccctaagtagaatc 2096242  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 2105542 - 2105461
Alignment:
Q  19 aaaccaacttactggattat---tcctctgtgcgattgcaataccacaacgatgcatctggacaagaaagtaaaacagagat 97  Q
    ||||| ||||||||||||||   |||||| | |||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  2105542 aaaccgacttactggattataattcctctctacgattgcaataccacaaccatgcatctggaaaagtaagtaaaacagagat 2105461  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 2105386 - 2105327
Alignment:
Q  109 aatgacaaatattagtagtttagttgttgaattaattttttctcttttatctaggtttaaa 169  Q
    |||||||||||||| ||| | |||| ||||||||||||||| ||||| |||||||||||||    
T  2105386 aatgacaaatattattagct-agtttttgaattaattttttttctttcatctaggtttaaa 2105327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 2105286 - 2105249
Alignment:
Q  223 tgtgttcaaacaaacaagtaattatcattactatatgt 260  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  2105286 tgtgttcaaataaacaagtaattatcattaccatatgt 2105249  T

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