View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_high_13 (Length: 319)
Name: NF18304_high_13
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 24750581 - 24750296
Alignment:
| Q |
16 |
aaagaggacataccccactagcaatcataacaccagtaacaacaggtacaagagccatataagtaagccaaccctccctcttaagggtcataagataagc |
115 |
Q |
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| T |
24750581 |
aaagaggacataccccactagcaatcataacaccagtaacaacaggtacaagagccatataagtaagccaaccctccctcttaagggtcataagataagc |
24750482 |
T |
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| Q |
116 |
aaaaaccgccgtnnnnnnnggagtcgtagcaccaatagcttgattaaaagacacaggaagatatcttagagaaatattccctccaaccacagacaaacaa |
215 |
Q |
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| T |
24750481 |
aaaaaccgccgtaaaaaacggtgtcgtagcaccaatagcttgattaaaagacacaggaagatatcttagagaaatattccctccaaccacagacaaacaa |
24750382 |
T |
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| Q |
216 |
aatataagtccaagtgatgatatcttcacaaattgtacccttgatctcactgtttgcaatggcaccaccttcatccatgatattgc |
301 |
Q |
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| T |
24750381 |
aatataagtccaagtgatgatatcttcacaaattgtacccttgatctcactgtttgcaatggcaccaccttcatccatgatattgc |
24750296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 31330637 - 31330464
Alignment:
| Q |
23 |
acataccccactagcaatcataacaccagtaacaacaggtacaagagccatataagtaagccaaccctccctcttaagggtcataagataagcaaaaacc |
122 |
Q |
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| T |
31330637 |
acataccccactagcaataacaacaccagtaacaacaggaacaagggtaagataagtgagacaagcctccctcttaaaggtcataatataagcaaaaatg |
31330538 |
T |
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| Q |
123 |
gccgtnnnnnnnggagtcgtagcaccaatagcttgattaaaagacacaggaagatatcttagagaaatattccc |
196 |
Q |
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| T |
31330537 |
gcagtaaagaaaggcgtagtcgcgccaatagcctgattaaacgacacaggaagatatcgaagcgaaatattccc |
31330464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 35016438 - 35016286
Alignment:
| Q |
26 |
taccccactagcaatcataacaccagtaacaacaggtacaagagccatataagtaagccaaccctccctcttaagggtcataagataagcaaaaaccgcc |
125 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||| |||| || || || |||||| ||||||||||||||| |
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| T |
35016438 |
taccccactagcaatgataacaccagtaacaacaggaacaagagcaagataagtaagccaagcctctcttttgagcgtcatagcataagcaaaaaccgca |
35016339 |
T |
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| Q |
126 |
gtnnnnnnnggagtcgtagcaccaatagcttgattaaaagacacaggaagata |
178 |
Q |
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| T |
35016338 |
gtaaaaaacggcgtagtagcaccgatagcttgattaaacgacacaggaagata |
35016286 |
T |
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