View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_high_27 (Length: 238)
Name: NF18304_high_27
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 67 - 220
Target Start/End: Original strand, 8400155 - 8400308
Alignment:
| Q |
67 |
gacaattgagagaattcggaaataaaattttgcgataaaggccaagagtaaggtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaa |
166 |
Q |
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| T |
8400155 |
gacaattgagagaattcggaaataaaattttgcgataaaggccaagagtaaggtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaa |
8400254 |
T |
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| Q |
167 |
agatggaaattgttgaatacttttacaagttatagtgattcctaatagctggac |
220 |
Q |
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| T |
8400255 |
agatggaaattgttgaataccttaacaagttatagtgattcctaatagctggac |
8400308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 5368802 - 5368737
Alignment:
| Q |
120 |
tgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
185 |
Q |
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| T |
5368802 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaata |
5368737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 5374559 - 5374494
Alignment:
| Q |
120 |
tgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
185 |
Q |
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| T |
5374559 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaata |
5374494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 5367997 - 5367931
Alignment:
| Q |
119 |
gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
185 |
Q |
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| T |
5367997 |
gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaata |
5367931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 30054956 - 30055021
Alignment:
| Q |
119 |
gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaat |
184 |
Q |
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| T |
30054956 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagttggtgaat |
30055021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 6889471 - 6889421
Alignment:
| Q |
135 |
agagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
185 |
Q |
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| T |
6889471 |
agagaagttaaagtgtgacatgaaaataagcaagttggaaaatgttgaata |
6889421 |
T |
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