View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18304_high_29 (Length: 228)

Name: NF18304_high_29
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18304_high_29
NF18304_high_29
[»] chr3 (4 HSPs)
chr3 (1-213)||(9765700-9765912)
chr3 (131-200)||(22157944-22158013)
chr3 (13-69)||(6077833-6077892)
chr3 (107-160)||(6077737-6077790)
[»] chr8 (1 HSPs)
chr8 (1-213)||(43651598-43651810)
[»] chr5 (1 HSPs)
chr5 (1-213)||(21114807-21115019)
[»] chr2 (1 HSPs)
chr2 (1-209)||(24863618-24863828)
[»] chr4 (2 HSPs)
chr4 (113-200)||(51862000-51862087)
chr4 (96-164)||(7807621-7807689)
[»] chr7 (2 HSPs)
chr7 (131-200)||(9333003-9333072)
chr7 (13-69)||(27273015-27273072)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 9765912 - 9765700
Alignment:
Q  1 tcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtcactgctcccagtttgttgattctttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9765912 tcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtccctgctcccagtttgttgattctttgt 9765813  T
Q  101 cttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9765812 cttgcaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 9765713  T
Q  201 tagaggttacttt 213  Q
    |||||||||||||    
T  9765712 tagaggttacttt 9765700  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 22157944 - 22158013
Alignment:
Q  131 tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 200  Q
    ||||||||||||| |||||||| | ||||||||||||| || ||| |||| || |||||||| |||||||    
T  22157944 tcctcaattctcattagcaattagaaaatatagatagaaaaactgccatacattagttactttgagttat 22158013  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 6077892 - 6077833
Alignment:
Q  13 cctgtcatg-tttcctctctatctttggatgaaa--tgtctcttgcaattgtaatttgga 69  Q
    ||||||||| |||||||| |||||||||||||||  | ||||||||||||||||||||||    
T  6077892 cctgtcatgctttcctctttatctttggatgaaacgtctctcttgcaattgtaatttgga 6077833  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 6077790 - 6077737
Alignment:
Q  107 aagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaata 160  Q
    |||||||||| ||||| || ||||||||||||||||| | ||||||| ||||||    
T  6077790 aagaaaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaaata 6077737  T

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Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 43651598 - 43651810
Alignment:
Q  1 tcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtcactgctcccagtttgttgattctttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  43651598 tcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtccctgctcccattttcttgattctttgt 43651697  T
Q  101 cttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 200  Q
    |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43651698 cttgaaaagaaaaacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 43651797  T
Q  201 tagaggttacttt 213  Q
    |||| ||||||||    
T  43651798 tagaagttacttt 43651810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 21114807 - 21115019
Alignment:
Q  1 tcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtcactgctcccagtttgttgattctttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  21114807 tcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtccctgctcccattttcttgattctttgt 21114906  T
Q  101 cttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 200  Q
    |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21114907 cttgaaaagaaaaacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctatcataaatcagttacttagagttat 21115006  T
Q  201 tagaggttacttt 213  Q
    |||| ||||||||    
T  21115007 tagaagttacttt 21115019  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24863618 - 24863828
Alignment:
Q  1 tcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaattt-ggacgtcactgctcccagttt-gttgattcttt 98  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |||||  || |||  ||||||||||    
T  24863618 tctttggtgaaacctgtcatgtttcctctctatctttggattaaatgtctcttgcaattgttatttgggacgtccctgctaacattttctttgattcttt 24863717  T
Q  99 gtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatc--agttacttagag 196  Q
     ||||||||  ||||  | ||||||| |||||||||||||| ||| ||||||||| || |||||||||||||| ||||||||||||  |||||||| |||    
T  24863718 atcttgaaa--aaaataaatagaattattcaatcctcaattgtcattagcaattgacagatatagatagagaaactgtcataaatcaaagttactttgag 24863815  T
Q  197 ttattagaggtta 209  Q
    |||||||| ||||    
T  24863816 ttattagaagtta 24863828  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 51862087 - 51862000
Alignment:
Q  113 aacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 200  Q
    |||| |||||| | ||| ||||||||||||| ||||| || ||||||||||||||| || ||| |||| ||||||||||| |||||||    
T  51862087 aacaatagaatcgctcattcctcaattctcattagcatttagcaaatatagatagaaaaactgccatagatcagttactttgagttat 51862000  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 7807621 - 7807689
Alignment:
Q  96 tttgtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatataga 164  Q
    |||||||||| |||||||||| ||| |  | ||||||||||||||| | ||||||| ||||||||||||    
T  7807621 tttgtcttgagaagaaaaacaatagtaccgctcaatcctcaattcttattagcaatcggcaaatataga 7807689  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 9333003 - 9333072
Alignment:
Q  131 tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 200  Q
    ||||||||||||| |||||||| |||||||||||||||  | ||| |||| ||||||||||| |||||||    
T  9333003 tcctcaattctcattagcaattagcaaatatagatagaataactgccatagatcagttactttgagttat 9333072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 27273015 - 27273072
Alignment:
Q  13 cctgtcatgtttcc-tctctatctttggatgaaatgtctcttgcaattgtaatttgga 69  Q
    |||||||||||| | ||| ||||| ||||||||| |||||||||||||||||||||||    
T  27273015 cctgtcatgttttcgtctttatctgtggatgaaacgtctcttgcaattgtaatttgga 27273072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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