View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_10 (Length: 435)
Name: NF18304_low_10
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 202 - 415
Target Start/End: Original strand, 20005302 - 20005515
Alignment:
| Q |
202 |
aaaggattacatttatccaaatgtcagtcaaaagtcaaagatcatttaggtatttacttagttaaagtttcaccattcaatcatattaattaagaaagcc |
301 |
Q |
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| T |
20005302 |
aaagaattacatttatccaaatgtcagtcaaaagtcaaagatcatttaggtatttacttagttaaagtttcaccattcaatcatattaattaagaaagcc |
20005401 |
T |
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| Q |
302 |
ttatttttgcaatgattctagtgtcatatatcaactaggtctctaagatatgcattaggttagtcaaattaatccctaatagcattaattcatgacctta |
401 |
Q |
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| T |
20005402 |
ttatttttgcaatgattctagtgtcatatatcaactaggtctctaagatatgcattatgttagtcaaattaatccctaagagcattaattcatgacctta |
20005501 |
T |
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| Q |
402 |
tttaattcagaaaa |
415 |
Q |
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|||||||| ||||| |
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| T |
20005502 |
tttaattcggaaaa |
20005515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 20005066 - 20005248
Alignment:
| Q |
1 |
aggaaggcccctgacaattgtgttggacaaatatcaaatgtagcaaaatacgtgtgtgccaacggtgcacataacgtcgcacatcagctcaattaaccct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20005066 |
aggaaggcccctgacaattgtgttggacaaatatcaaatgtagcaca-tacgtgtgtgccaacggggcacataacgtcgcacatcagctcaattaaccct |
20005164 |
T |
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| Q |
101 |
gctcagtggggcacataagtgatagagactgactagtggggactaacttgatcaacgttgcataatgtcaaggaccattttgaa |
184 |
Q |
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| T |
20005165 |
gctcagtggggcacataagtgatagagactgactagtggcgactaacttgatcaacgttgcataatgtcaaggaccattttgaa |
20005248 |
T |
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