View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_11 (Length: 428)
Name: NF18304_low_11
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_11 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 135 - 412
Target Start/End: Original strand, 7130911 - 7131188
Alignment:
| Q |
135 |
acttttgtaatcccatgtgtcatcttgtcccatatatcattagtgttttcttgtggctatccaaaagccccctctaagatcttgggttgaaaatattttg |
234 |
Q |
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| T |
7130911 |
acttttgtaatcccatgtgtcatcttgtcccatataacattagtgttttcttgtggctatccaaaagccccctctaagatcttgggttgaaaatattttg |
7131010 |
T |
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| Q |
235 |
gttttcactcttcaaatgcaagcacttggaaaaagtttgtttgcataaaatataaacaaagaaagtttggaaatttcagagataaacagacatgttggga |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7131011 |
gttttcactcttcaaatgcaagcacttggaaaaagtttgtttgcataaaatataaacaaagaaagtttggaaatttcagagataaatagacatgttggga |
7131110 |
T |
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| Q |
335 |
ttaggtttcataattgatttcattaacgcataattaacttatgattcctcgctctgttaatatatgtaataacatatg |
412 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7131111 |
ttaggtttcataattgatttcattaatgcataattaacttatgattcctcgctctgttaacatatgtaataacatatg |
7131188 |
T |
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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 17083998 - 17083889
Alignment:
| Q |
25 |
tcatgtgtggaaggactgtcataaaatctatacatcttatttgatcaatggttt-aagttaatgggttcaagttggaccaatttttcggtgagtccaaat |
123 |
Q |
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| T |
17083998 |
tcatgtgtggatggactaccgtaaaatatgtacatcttatttgatcaatggttttaagttaatgggtccaagttggaccaatttttcaatgggtccaaat |
17083899 |
T |
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| Q |
124 |
taaacgccac |
133 |
Q |
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| T |
17083898 |
taaacgccac |
17083889 |
T |
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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 38701152 - 38701069
Alignment:
| Q |
44 |
cataaaatctatacatcttatttgatcaatggtttaagttaatgggttcaagttggaccaatttttcggtgagtccaaattaaac |
128 |
Q |
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| T |
38701152 |
cataaaatctatacatcctatttgatcaatggtttaagttaattggttcaagttagaccaatttttcaatg-gtccaaattaaac |
38701069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 54385319 - 54385236
Alignment:
| Q |
45 |
ataaaatctatacatcttatttgatcaatggtttaagttaatgggttcaagttggaccaatttttcggtgagtccaaattaaac |
128 |
Q |
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| T |
54385319 |
ataaaatctatacatcttatttgatcaatggtctaagttaattggtccaagttggatcaatttttcaatgggtccaaattaaac |
54385236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 9257408 - 9257291
Alignment:
| Q |
135 |
acttttgtaatcccatgtgtcatcttgtcccatatatcattagtgttttcttgtggctatccaaaagccccctctaagatcttgggtt-gaaaatatttt |
233 |
Q |
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|||||| ||||| |||||| |||||||||||| |||||||||||| || | ||||| |||| |||| |||||| |||||||||| ||| |||||| ||| |
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| T |
9257408 |
acttttttaatctcatgtgccatcttgtcccacatatcattagtgcttccatgtggttatctaaaa-ccccctataagatcttgtgttggaaaatccttt |
9257310 |
T |
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| Q |
234 |
ggttttcactcttcaaatg |
252 |
Q |
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| T |
9257309 |
gtttttcacccttaaaatg |
9257291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 78192 - 78080
Alignment:
| Q |
150 |
tgtgtcatcttgtcccatatatcattagtgttttcttgtggctatccaaaagccccctctaagatcttgggttgaaaatattttggttttcactcttcaa |
249 |
Q |
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|||| |||||||||||| |||||||| ||| |||||| || || || ||| | ||||||||||||||| |||| || | ||| ||||||| |||||| |
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| T |
78192 |
tgtgccatcttgtcccacatatcatttgtgctttcttatgcctgaccgaaacctccctctaagatcttgtgttggaagattcttgtttttcacccttcaa |
78093 |
T |
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| Q |
250 |
atgcaagcacttg |
262 |
Q |
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|||| | |||||| |
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| T |
78092 |
atgccaccacttg |
78080 |
T |
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