View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_14 (Length: 399)
Name: NF18304_low_14
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 30435564 - 30435184
Alignment:
| Q |
1 |
gtgttgctggagacggtgcaaatgaaaaattgttatcaatttcaagtgatggtttgttatatcaagtaagatttcttaaattaaaagattactactcttt |
100 |
Q |
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| T |
30435564 |
gtgttactggagacggtgcaaatgaaaaattgttatccatttcaagtgatggtttgttatatcaagtaagatttcttaaataaaaagattactactcttt |
30435465 |
T |
|
| Q |
101 |
tcttgagttcatagacaacctcttccttttgagtttgagttccaacttctccatattcatatgaaattaaataacatcctactcctggatgatgtcaaca |
200 |
Q |
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| T |
30435464 |
tcttgagttcatagacaacctcttccttttgagtttgagttccaacttctccatattcatatgaaattaaataacatcctaatcctggatgatgtcaaca |
30435365 |
T |
|
| Q |
201 |
atgtgaggtatcatggcctttatgatgtagttaatgaagtggtagagtttccacacgagagaagttgaagtaattggtgatataaatttaaacatgtttg |
300 |
Q |
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| T |
30435364 |
atgtgaggtatcatggcctctatgatgtagttaatgaagtggtagagtttccacacgagagaggttgaagtaattggtgatataaatttaaacatgtttg |
30435265 |
T |
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| Q |
301 |
attggcattttatatacatgactttttggttatagcttttgtttgtatctttgccattcacctgccttatgtagctatttg |
381 |
Q |
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| T |
30435264 |
attggcattttatatacatgactttttggttatagcttttgtttgtatctttgccattcacctgccttatgtagctatttg |
30435184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 49 - 381
Target Start/End: Complemental strand, 47765306 - 47764975
Alignment:
| Q |
49 |
atggtttgttatatcaagtaagatttcttaaattaaaagattactactcttttcttgagttcatagacaacctcttccttttgagtttgagttccaactt |
148 |
Q |
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| T |
47765306 |
atggtttgttatattaagtaagatttcttaaatttaaagattactactcttttcttgagttcatagacaacctcttccttttgagtttgagttccaactt |
47765207 |
T |
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| Q |
149 |
ctccatattcatatgaaattaaataacatcctactcctggatgatgtcaacaatgtgaggtatcatggcctttatgatgtagttaatgaagtggtagagt |
248 |
Q |
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|||||| || || |||||||||||||| ||| || ||||||||| |||| || |||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
47765206 |
ctccat--tcgtacgaaattaaataacaagctaatcgtggatgatgccaactatctgaggtatcatggcctctatgatgtagttaatgaagtggtaaagt |
47765109 |
T |
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| Q |
249 |
ttccacacgagagaagttgaagtaattggtgatataaatttaaacatgtttgattggcattttatatacatgactttttggttatagcttttgtttgta- |
347 |
Q |
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|||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| |
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| T |
47765108 |
ttccacacgagagaggttgatgtaattgatgatataaatttaaacatgtttgattggcattttatatacatgaatttttggttatagcttttttatgtat |
47765009 |
T |
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| Q |
348 |
tctttgccattcacctgccttatgtagctatttg |
381 |
Q |
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| T |
47765008 |
tttttgccattcacctgccttatatagttatttg |
47764975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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