View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_15 (Length: 350)
Name: NF18304_low_15
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 40549705 - 40550038
Alignment:
| Q |
1 |
ggatatagtaacatcaacactggcctgcnnnnnnnnnnntgaaacatacatgaaatagtatttcataacaacaaagaaattcaagattttgattaaggaa |
100 |
Q |
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| T |
40549705 |
ggatatagtaacatcaacactggcctgcaaaaa------tgaaacatacatgaaatagtatttcataacaacaaagaaattcaagattttgattaaggaa |
40549798 |
T |
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| Q |
101 |
tg-----aaatggagaaaataatagagaaacatagaagattttgcatatacccagcaatggaattaagttgggtgatgaaaatccacaacttgctcattt |
195 |
Q |
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| T |
40549799 |
tgaaatgaaatggagaaaataatacagaaacatagaagattttgcatatacccagcaatggaattaagttgggtgatgaaaatccacaacttgctcattt |
40549898 |
T |
|
| Q |
196 |
tggtgacgggtggttggaaatgaagaagagttaggaatgaaagaaagatttggagacaaagtaaagtgtggaaaaacgttcgagagttacaaaaacaaac |
295 |
Q |
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| T |
40549899 |
tggtgacgggtggttggaaatgaagaagggttaggaatgaaagaaagattcggagacaaagtaaagtgtggaaaaacgttcgagagttacaaaaacaaac |
40549998 |
T |
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| Q |
296 |
aacgttggattaaaggcagttacctcttacatatatattg |
335 |
Q |
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| T |
40549999 |
aacgttggattaaaggcagttacctcttacatatatattg |
40550038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 45378262 - 45378311
Alignment:
| Q |
138 |
tgcatatacccagcaatggaattaagttgggtgatgaaaatccacaactt |
187 |
Q |
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| T |
45378262 |
tgcatatacccagcaagggaatgaagctgggtgatcaaagtccacaactt |
45378311 |
T |
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