View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_2 (Length: 655)
Name: NF18304_low_2
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 19 - 637
Target Start/End: Original strand, 37444196 - 37444814
Alignment:
| Q |
19 |
tcaatgtttttaaacaagtaatttgtcaaaccctcgctgctaatattaaaaatgttcctcacactctcagaccaaaatataaagcattaataatttccat |
118 |
Q |
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| T |
37444196 |
tcaatgtttttaaacaagtaatttgtcaaaccctcactgctaatattaaaaatgttcctcacactctcagaccaaaatataaagcattaataatttccat |
37444295 |
T |
|
| Q |
119 |
tgaaaaacaacaaaaaagcacaacaatcttgaagtccaaatgcagaaagataattaccgttgccaccacatcgttcacaggacaccggatcaccctgcaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37444296 |
tgaaaaacaacaaaaaagcacaacaatcttgaagtccaaatgcagaaagataattaccgttgccaccacatcgctcacaggacaccggatcaccctgcaa |
37444395 |
T |
|
| Q |
219 |
aatcccatcactcgttaccaaaagtccaaaacaaagtatcaacattgacccacaagtttattgttaccaaacgaaataacttattctggaagttaaactg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37444396 |
aatcccatcactcgttaccaaaagtccaaaacaaagtatcaacattgacccacaagtttattgttaccaaacgaaataacatattctggaagttaaactg |
37444495 |
T |
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| Q |
319 |
attgcagtcatgtatgcaatgcatctgaatcctataatagatatctgaagttccattcaaaccacaaacccccaccccgaaaaaggttttttgatcaaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37444496 |
attgcagtcatgtatgcaatgcatctgaatcctataatagatatctgaagttccattcaaaccacaaacccccaccccgaaaaaggttttttgatcaaaa |
37444595 |
T |
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| Q |
419 |
ccgacagaaactcagaattgaatacaaacttattatcaataactggtttaataaagtttcacatatcttaaaaaccacaaaatcatgaataagattgtca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37444596 |
ccgacagaaactcagaattgaatacaaacttattatcaataactggtttaataaagtttcacatatcttaaaaaccacaaaatcatgaataagattgtca |
37444695 |
T |
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| Q |
519 |
gattgattgactgtgtaaaaaatttgcaaaagacattgtatatcaaaatcaaactcatgaatatacggaattagtccattcggacccactaaaataaaca |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
37444696 |
gattgattgactgtgtaaaaaatttgcaaaagacattgtatatcaaaatcaaactcatgaatatacagaattagtccatttggacccactaaaataaaca |
37444795 |
T |
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| Q |
619 |
catttctgcctaaggttct |
637 |
Q |
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||||||||||||||||||| |
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| T |
37444796 |
catttctgcctaaggttct |
37444814 |
T |
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