View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_20 (Length: 288)
Name: NF18304_low_20
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 27895980 - 27896248
Alignment:
| Q |
15 |
acgtataacctagagttcagaaatatcgtgtcctcgttcagcataaatagccaaacctgcacataaaattatatcccaatctcaattaataatttagata |
114 |
Q |
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| T |
27895980 |
acgtataacctagagttcagaaatatcgtgtcctcgttcagcataaatagccaaacctgcacataaaattatatcccaatctcaattaataatttagata |
27896079 |
T |
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| Q |
115 |
ctaccttgttctctaataattaactaataattgtttcaatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtacc |
214 |
Q |
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| T |
27896080 |
ctaccttgttctctaataattaactaataattgtttcaatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtacc |
27896179 |
T |
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| Q |
215 |
aagaaagcatgcattgagctacataaatgaagatcatgccacaaccacaagtgatcttgctgatgatgt |
283 |
Q |
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| T |
27896180 |
aagaaagcatgcattgagctacataaatgaagatcatgccacaaccacaagtgatcttgctgatgatgt |
27896248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 27918223 - 27918358
Alignment:
| Q |
151 |
caatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaagatca |
250 |
Q |
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| T |
27918223 |
caatattcaagatgcttagttcatttgttgagaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctactggagtgaagatca |
27918322 |
T |
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| Q |
251 |
tgccacaaccacaagt---gatcttgctgatgatgt |
283 |
Q |
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| T |
27918323 |
tgccacaaccacaggtcacgagcttgctgatgatgt |
27918358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 27929757 - 27929894
Alignment:
| Q |
122 |
gttctctaataattaactaataattgtttcaatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaag |
221 |
Q |
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| T |
27929757 |
gttctctaattaatcactattaactctttcaatattcaagatgcttagttcttttgttggtaaagcacaaaagagtttatcagtctttgtacccagaaag |
27929856 |
T |
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| Q |
222 |
catgcattgagctacataaatgaagatcatgccacaac |
259 |
Q |
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| T |
27929857 |
catgcattgagctactggaatgaagatcatgccacaac |
27929894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 27923408 - 27923517
Alignment:
| Q |
148 |
tttcaatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaaga |
247 |
Q |
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||||| ||||||| |||||| ||| |||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||| |
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| T |
27923408 |
tttcagtattcaagatgcttagttcttttgttggtaaagtacaaaagagtttatcactctttgtaccgagaaagcatgcattgagctactggagtgaaga |
27923507 |
T |
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| Q |
248 |
tcatgccaca |
257 |
Q |
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|||||||||| |
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| T |
27923508 |
tcatgccaca |
27923517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 27918129 - 27918220
Alignment:
| Q |
35 |
aaatatcgtgtcctcgttcagcataaatagccaaac-ctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttc |
125 |
Q |
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||||||||||| |||| ||||||||||||||||||| |||| ||||||| |||| ||||||| |||||||||| | ||||||| |||||| |
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| T |
27918129 |
aaatatcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccaatcttgattaataattcaaatactacattgttc |
27918220 |
T |
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