View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_23 (Length: 263)
Name: NF18304_low_23
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 25085074 - 25085285
Alignment:
| Q |
1 |
agtatcataggtgagtatttgtcgacaaaatcaaaataatcatattgtacacaactataaatgtaaatattcaagcataaaaacttatgtatatgctgca |
100 |
Q |
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| T |
25085074 |
agtatcatgggtgagtatttgtcaacaaaatcaaaataatcatattgtacacaactataaatgtaaatattcaagcataaaaacttatgtatatgctgca |
25085173 |
T |
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| Q |
101 |
aatgatatttcattaaattcattacattcaatactatgaagatccatatattcttctcaataagttgatgccacctttcttgtaagttgggtcaagatat |
200 |
Q |
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| T |
25085174 |
aatgata-ttcattaaattcattacattcaatactatgaagatctatatattcttctcaataagttgatgccacctttcttgtaagttgggtcaagatat |
25085272 |
T |
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| Q |
201 |
catgtaaacggta |
213 |
Q |
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| T |
25085273 |
catgtaaacggta |
25085285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 25073524 - 25073607
Alignment:
| Q |
78 |
taaaaacttatgtatatgctgcaaatgatatttcattaaattcattacattcaatactatgaagatccatatattcttctcaata |
162 |
Q |
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| T |
25073524 |
taaaaacttatgtctatattgcaaatggtata-cattaaattcaataggtttaatactatgaaggtctatatattcttctcaata |
25073607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 25091304 - 25091346
Alignment:
| Q |
76 |
cataaaaacttatgtatatgctgcaaatgatatttcattaaatt |
119 |
Q |
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| T |
25091304 |
cataaaaacttatgtatatgctgcaaatggta-ttcattaaatt |
25091346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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