View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_24 (Length: 260)
Name: NF18304_low_24
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 25306529 - 25306772
Alignment:
| Q |
6 |
ctcgaagaatatgtgatttgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacatcgtgaa |
105 |
Q |
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| T |
25306529 |
ctcgaaaaagatgtgatttgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacaccgtgaa |
25306628 |
T |
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| Q |
106 |
gtaaaagatgagaatttgcatctatcaattatcttgataaaaggaaaatccaaggnnnnnnnnncatgttggagtggttagtgtcttgaagagtggttca |
205 |
Q |
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| T |
25306629 |
gtaaaagatgagaatttgcatctataaattatcttgataaaaggaaaatccaagg-aaaaaaaacatgttggagtggttagtgtcttgaagagtggttca |
25306727 |
T |
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| Q |
206 |
ataaaagttataaaacctgccagagagtaatgagaaatgaaccattg |
252 |
Q |
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| T |
25306728 |
ataaaagttataaaacctgcc--agagtaatgagaaatgaaccattg |
25306772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 25277867 - 25277996
Alignment:
| Q |
24 |
tgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacatcgtgaagt-aaaagatgagaattt |
122 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
25277867 |
tgttgtgatgtggattatagattttttaacaaaatatagtacccgtagagaacatatggatgctaaatgtgaacaacgtgaagtaaaaagatgagaattt |
25277966 |
T |
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| Q |
123 |
gcatc--tatcaattatcttgataaaagga |
150 |
Q |
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| T |
25277967 |
gcatctatataaattatcttgataaaagga |
25277996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 25278084 - 25278137
Alignment:
| Q |
170 |
catgttggagtggttagtgtcttgaagagtggttcaataaaagttataaaacct |
223 |
Q |
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| T |
25278084 |
catgttggaggggttagtgtcttgaagaggggttcaataaaagttataaaacct |
25278137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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