View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18304_low_25 (Length: 254)
Name: NF18304_low_25
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 32119372 - 32119588
Alignment:
| Q |
12 |
aagaaacggaaagaacggaactatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
32119372 |
aagaaacggaaagaacggaactatgacatactctattaaagatctgtccacttggagtagaattgaaaaattatacgggggcgcgaaagatgtaaaagtg |
32119471 |
T |
|
| Q |
112 |
cattttcttgaagagtatagtagctgtcttataatgtacttatttcattagatgtttttcaccaagaagttccataaaatcggttccaa--ttgagaaga |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
32119472 |
cattttcttgaagagtataggagctgtcttataatgtccttatttcattagaagtttttcaccaagaagttccataaaattggttccaatgttgagaaga |
32119571 |
T |
|
| Q |
210 |
tccgcatactttccact |
226 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
32119572 |
tcggcatactttccact |
32119588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 14375015 - 14374918
Alignment:
| Q |
33 |
tatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtgcattttcttgaagagtata |
130 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| ||||||| | | |||||| |||||||| || ||||||||||| |||||||||||| |
|
|
| T |
14375015 |
tatgacatactctattaaggatccgtccacttggagtagaatcgaaaaatgacatgggggcgcgaaagatacacaagtgcatttttttgaagagtata |
14374918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 14239144 - 14239276
Alignment:
| Q |
13 |
agaaacggaaagaacggaactatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtgc |
112 |
Q |
| |
|
||||||||||| || | | ||||||||| |||||| | ||| ||||||||||||||||||| |||||| | | |||||||| || ||||| |||||| |
|
|
| T |
14239144 |
agaaacggaaaaaatgccagtatgacatactctattgaggattcgtccacttggagtagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgc |
14239243 |
T |
|
| Q |
113 |
attttcttgaagagtatagtagctgtcttataa |
145 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
14239244 |
attttattgaagagtatagtagctgtcttataa |
14239276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 41437013 - 41437125
Alignment:
| Q |
33 |
tatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtgcattttcttgaagagtatagt |
132 |
Q |
| |
|
||||||||| |||||||| ||| || |||||||||||||||| ||||| | | |||||||| || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
41437013 |
tatgacatactctattaaggattcgaccacttggagtagaatcaaaaaacgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagt |
41437112 |
T |
|
| Q |
133 |
agctgtcttataa |
145 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41437113 |
agctgtcttataa |
41437125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 41450241 - 41450351
Alignment:
| Q |
35 |
tgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtgcattttcttgaagagtatagtag |
134 |
Q |
| |
|
||||||| |||||||| ||| || |||||||||||||||| ||||| | | |||||||| || ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
41450241 |
tgacatactctattaaggattcgaccacttggagtagaatcaaaaaacgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtag |
41450340 |
T |
|
| Q |
135 |
ctgtcttataa |
145 |
Q |
| |
|
||||||||||| |
|
|
| T |
41450341 |
ctgtcttataa |
41450351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 41437559 - 41437624
Alignment:
| Q |
171 |
caccaagaagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaa |
234 |
Q |
| |
|
|||||| ||||||||||||||| || ||||| | || ||||| |||||||||||||||||||||| |
|
|
| T |
41437559 |
caccaacaagttccataaaatcagtcccaatgttaagcagatcggcatactttccactttgagtaa |
41437624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 41450785 - 41450854
Alignment:
| Q |
171 |
caccaagaagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaacttt |
238 |
Q |
| |
|
|||||| |||||||||||| || || ||||| | || ||||| |||||||||||||||||||||||||| |
|
|
| T |
41450785 |
caccaacaagttccataaagtcagtcccaatgttaagcagatcggcatactttccactttgagtaacttt |
41450854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 14239657 - 14239685
Alignment:
| Q |
143 |
taatgtacttatttcattagatgtttttc |
171 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14239657 |
taatgtacttatttcattagatgtttttc |
14239685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 14239735 - 14239798
Alignment:
| Q |
178 |
aagttccataaaatcggttccaat--tgagaagatccgcatactttccactttgagtaactttt |
239 |
Q |
| |
|
||||||||||||||| || ||||| | || ||||| |||||||||||||||||||||| |||| |
|
|
| T |
14239735 |
aagttccataaaatcagtcccaatgttaagcagatcagcatactttccactttgagtaattttt |
14239798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University