View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_26 (Length: 252)
Name: NF18304_low_26
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42083464 - 42083702
Alignment:
| Q |
1 |
cccaaatcctcaattaattatgtgtggggtccatataagctataatcccaatttcaaatttgaattcaagttttccctcccatcattttgtttgtttcca |
100 |
Q |
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| T |
42083464 |
cccaaatcctcaattaattatgtgtggggcccatataagctataatcccaattccaaatttgaattcgagttttccctctcatcattttgtttgtttcca |
42083563 |
T |
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| Q |
101 |
atgtcatgtcatcattgttgagtaacatcattaatactacataacactgttaatcaaggtgccttaatgactttgtatgccacatctaaatttgttcatt |
200 |
Q |
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| T |
42083564 |
atgtcatgtcatcattgttgactaacatcattaatactacataacaccgttaatcaaagtgccttaatgactttgtcagccacatctaactttgttcatt |
42083663 |
T |
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| Q |
201 |
tttcaaaaagactaaattaattgttgttttccctttcat |
239 |
Q |
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| T |
42083664 |
tttcaaagagacaaaattaattgttgctttctctttcat |
42083702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 45207789 - 45207879
Alignment:
| Q |
149 |
gttaatcaaggtgccttaatgactttgtatgccacatctaaatttgttcatttttcaaaaagactaaattaattgttgttttccctttcat |
239 |
Q |
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| T |
45207789 |
gttaatcaaggtgccttaatgactttgtatggcacatctaaatttgttcatttttcaaagagacaaaattaattgttgttttccctttcat |
45207879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 45207496 - 45207562
Alignment:
| Q |
77 |
ctcccatcattttgtttgtttccaatgtcatgtcatcattgttgagtaacatcattaatactacata |
143 |
Q |
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| T |
45207496 |
ctcccatcattttgtttgtttccaatgtcatgtcatcattgttgagtaacatcattaatactacata |
45207562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45207442 - 45207496
Alignment:
| Q |
1 |
cccaaatcctcaattaattatgtgtggggtccatataagctataatcccaatttc |
55 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45207442 |
cccatatcctcaattaattatgtgaggggtccatataagctataatcccaatttc |
45207496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 27175021 - 27174969
Alignment:
| Q |
52 |
tttcaaatttgaattcaagttttccctcccatcattttgtttgtttccaatgt |
104 |
Q |
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| T |
27175021 |
tttcaaatttgaattcaaattttccctcccatcactttgtttgtttccaatgt |
27174969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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