View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_28 (Length: 250)
Name: NF18304_low_28
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4339034 - 4339272
Alignment:
| Q |
1 |
atgaatttgagaatagtgtaacgaaatggtatagtatcagatatgattaacgttaggacattacgaagttgattaatctattttctaacgatgagacgtt |
100 |
Q |
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| T |
4339034 |
atgaatttgagaatagtgtaacgaaatggtatagtatcagatatgattaacgttaggacattacgaagttgattaatctattttctaacgatgagacgtt |
4339133 |
T |
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| Q |
101 |
aatgatatgaaaattgttgttatttttattcaaccgtgttataaaatttgaggatgggttgcataatcagtgatcactcttactcttctcttgatattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4339134 |
aatgatatgaaaattgttgttatttttattcaacggtgttataaaatttgaggatgggttgcataatcagtgatcattcttactcttctcttgatattgc |
4339233 |
T |
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| Q |
201 |
agatgaggagacagggtggtatgacggtcaggtattcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4339234 |
agatgaggagacagggtggtatgacggtcaggtattcat |
4339272 |
T |
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